HL_5OQL_011

3D structure

PDB id

5OQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

5OQL|1|1|U|742, 5OQL|1|1|U|743

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5OQL_011 not in the Motif Atlas

Homologous match to HL_4V88_188

Geometric discrepancy: 0.447

The information below is about HL_4V88_188

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5OQL|1|1|G|738
5OQL|1|1|U|739
5OQL|1|1|A|740
5OQL|1|1|A|741
5OQL|1|1|U|742
5OQL|1|1|U|743
5OQL|1|1|C|744

Current chains

Chain 1

35S rRNA

Nearby chains

Chain i

RNA cytidine acetyltransferase

Chain o

40S ribosomal protein S6