HL_5OQL_020
3D structure
- PDB id
- 5OQL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GGUGCC
- Length
- 6 nucleotides
- Bulged bases
- 5OQL|1|1|U|1147
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5OQL_020 not in the Motif Atlas
- Geometric match to HL_5TBW_006
- Geometric discrepancy: 0.1877
- The information below is about HL_5TBW_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_71121.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 24
Unit IDs
5OQL|1|1|G|1145
5OQL|1|1|G|1146
5OQL|1|1|U|1147
5OQL|1|1|G|1148
5OQL|1|1|C|1149
5OQL|1|1|C|1150
Current chains
- Chain 1
- 35S rRNA
Nearby chains
- Chain B
- Utp2
- Chain H
- U3 small nucleolar RNA-associated protein 11
- Chain Z
- Bms1
- Chain b
- Putative U3 small nucleolar ribonucleoprotein
- Chain x
- 40S ribosomal protein s23-like protein
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