HL_5OQL_022

3D structure

PDB id

5OQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

5OQL|1|1|G|1489

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5OQL_022 not in the Motif Atlas

Homologous match to HL_4V88_206

Geometric discrepancy: 0.4502

The information below is about HL_4V88_206

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

5OQL|1|1|A|1485
5OQL|1|1|G|1486
5OQL|1|1|G|1487
5OQL|1|1|U|1488
5OQL|1|1|G|1489
5OQL|1|1|A|1490
5OQL|1|1|A|1491
5OQL|1|1|A|1492
5OQL|1|1|U|1493
5OQL|1|1|U|1494

Current chains

Chain 1

35S rRNA

Nearby chains

Chain g

KRR1 small subunit processome component

Chain t

40S ribosomal protein S14-like protein