HL_5OQL_030

3D structure

PDB id

5OQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5OQL_030 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.3509

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

5OQL|1|1|A|1668
5OQL|1|1|U|1669
5OQL|1|1|A|1670
5OQL|1|1|A|1671
5OQL|1|1|A|1672
5OQL|1|1|U|1673

Current chains

Chain 1

35S rRNA

Nearby chains

Chain P

Utp24

Chain Z

Bms1

Chain w

40S ribosomal protein S22-like protein