HL_5OT7_053
3D structure
- PDB id
- 5OT7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Elongation factor G-ribosome complex captures in the absence of inhibitors.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UAUUGAAGCA
- Length
- 10 nucleotides
- Bulged bases
- 5OT7|1|4|C|574
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5OT7_053 not in the Motif Atlas
- Geometric match to HL_7A0S_018
- Geometric discrepancy: 0.1556
- The information below is about HL_7A0S_018
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.3
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
5OT7|1|4|U|566
5OT7|1|4|A|567
5OT7|1|4|U|568
5OT7|1|4|U|569
5OT7|1|4|G|570
5OT7|1|4|A|571
5OT7|1|4|A|572
5OT7|1|4|G|573
5OT7|1|4|C|574
5OT7|1|4|A|575
Current chains
- Chain 4
- 23S Ribosomal RNA
Nearby chains
- Chain a
- 50S ribosomal protein L32
- Chain h
- 50S ribosomal protein L3
- Chain q
- 50S ribosomal protein L15
- Chain w
- 50S ribosomal protein L21
Coloring options: