5OT7 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5OT7_001 | 1/1/12:22 | No text annotation | homologous HL_5J7L_001 NA | |
| HL_5OT7_004 | 1/1/186:191 | No text annotation | ||
| HL_5OT7_006 | 1/1/259:267 | GNRA related | homologous HL_5J7L_006 NA | |
| HL_5OT7_007 | 1/1/296:301 | GNRA | homologous HL_5J7L_007 NA | |
| HL_5OT7_008 | 1/1/320:333 | No text annotation | homologous HL_6CZR_079 NA | |
| HL_5OT7_013 | 1/1/522:527 | Mini UNCG | geometric HL_4YAZ_004 HL_90436.3 | |
| HL_5OT7_014 | 1/1/617:623 | GNRA-like with tWH | homologous HL_4LFB_014 HL_86621.1 | |
| HL_5OT7_019 | 1/1/862:867 | GNRA | homologous HL_5J7L_019 NA | |
| HL_5OT7_020 | 1/1/897:902 | GNRA | homologous HL_4LFB_020 HL_34789.3 | |
| HL_5OT7_024 | 1/1/1076:1081 | GNRA | homologous HL_5J7L_023 NA | |
| HL_5OT7_026 | 1/1/1119:1154 | No text annotation | ||
| HL_5OT7_031 | 1/1/1445:1457 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_5OT7_032 | 1/1/1515:1520 | GNRA | homologous HL_6CZR_103 NA | |
| HL_5OT7_034 | 1/2/29:42 | No text annotation | geometric HL_8C3A_054 NA | |
| HL_5OT7_036 | 1/4/59:68 | No text annotation | homologous HL_7RQB_001 NA | |
| HL_5OT7_037 | 1/4/87:95 | No text annotation | homologous HL_7RQB_002 NA | |
| HL_5OT7_038 | 1/4/123:128 | No text annotation | homologous HL_4WF9_003 HL_75660.7 | |
| HL_5OT7_039 | 1/4/139:142A | No text annotation | homologous HL_7RQB_004 NA | |
| HL_5OT7_041 | 1/4/194:201 | No text annotation | geometric HL_7RQB_006 NA | |
| HL_5OT7_042 | 1/4/225:230 | No text annotation | homologous HL_7RQB_007 NA | |
| HL_5OT7_043 | 1/4/246:252 | No text annotation | homologous HL_7A0S_008 HL_76371.2 | |
| HL_5OT7_045 | 1/4/305:312 | No text annotation | homologous HL_7RQB_010 NA | |
| HL_5OT7_046 | 1/4/319:323 | No text annotation | homologous HL_4WF9_011 HL_75660.7 | |
| HL_5OT7_047 | 1/4/327:335 | T-loop with unstacked turn | homologous HL_5J7L_144 NA | |
| HL_5OT7_109 | 1/4/383:391 | No text annotation | ||
| HL_5OT7_049 | 1/4/410:417 | Pseudoknot geometry | homologous HL_7A0S_014 HL_30680.5 | |
| HL_5OT7_050 | 1/4/462:467 | GNRA | homologous HL_4WF9_015 HL_34789.3 | |
| HL_5OT7_051 | 1/4/487:493 | GNRA | homologous HL_7RQB_016 NA | |
| HL_5OT7_053 | 1/4/566:575 | T-loop with 2 stacked bulged bases | geometric HL_7A0S_018 HL_33597.3 | |
| HL_5OT7_054 | 1/4/612:615 | No text annotation | geometric HL_2Y9H_003 HL_75660.7 | |
| HL_5OT7_055 | 1/4/629:634 | GNRA | homologous HL_5J7L_152 NA | |
| HL_5OT7_056 | 1/4/641:647 | No text annotation | homologous HL_7RQB_021 NA | |
| HL_5OT7_057 | 1/4/712:719 | No text annotation | homologous HL_7RQB_022 NA | |
| HL_5OT7_058 | 1/4/744:753 | No text annotation | homologous HL_7RQB_023 NA | |
| HL_5OT7_059 | 1/4/779:785 | UNCG variation | homologous HL_7A0S_023 HL_51020.2 | |
| HL_5OT7_060 | 1/4/825:832 | No text annotation | geometric HL_7KI3_001 HL_75660.7 | |
| HL_5OT7_062 | 1/4/955:962 | GNRA | homologous HL_7RQB_027 NA | |
| HL_5OT7_063 | 1/4/978:985 | No text annotation | homologous HL_7RQB_028 NA | |
| HL_5OT7_067 | 1/4/1222:1227 | GNRA | homologous HL_7RQB_032 NA | |
| HL_5OT7_068 | 1/4/1281:1289 | No text annotation | homologous HL_7RQB_033 NA | |
| HL_5OT7_069 | 1/4/1324:1330 | Pseudoknot geometry with 3' bulge | homologous HL_4WF9_033 HL_49081.1 | |
| HL_5OT7_070 | 1/4/1363:1368 | GNRA | homologous HL_7RQB_035 NA | |
| HL_5OT7_071 | 1/4/1389:1398 | No text annotation | homologous HL_7RQB_036 NA | |
| HL_5OT7_072 | 1/4/1451:1459 | No text annotation | homologous HL_7RQB_037 NA | |
| HL_5OT7_073 | 1/4/1492:1498 | No text annotation | ||
| HL_5OT7_075 | 1/4/1565:1568 | Mini UNCG | homologous HL_7A0S_039 HL_90436.3 | |
| HL_5OT7_076 | 1/4/1612:1619 | No text annotation | homologous HL_7A0S_040 HL_28592.2 | |
| HL_5OT7_077 | 1/4/1631:1635 | No text annotation | homologous HL_7RQB_041 NA | |
| HL_5OT7_110 | 1/4/1686:1702 | No text annotation | ||
| HL_5OT7_078 | 1/4/1691:1696 | UNCG | homologous HL_4WF9_040 HL_61337.3 | |
| HL_5OT7_079 | 1/4/1720:1742 | No text annotation | homologous HL_7RQB_043 NA | |
| HL_5OT7_080 | 1/4/1752:1756 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_5OT7_081 | 1/4/1777:1787 | No text annotation | homologous HL_5J7L_178 NA | |
| HL_5OT7_082 | 1/4/1806:1811 | GNRA | homologous HL_7RQB_046 NA | |
| HL_5OT7_084 | 1/4/1909:1921 | No text annotation | ||
| HL_5OT7_111 | 1/4/1950:1956 | No text annotation | ||
| HL_5OT7_086 | 1/4/2027:2036 | No text annotation | homologous HL_7RQB_050 NA | |
| HL_5OT7_088 | 1/4/2205:2219 | Mini UNCG | geometric HL_5SWD_005 HL_90436.3 | |
| HL_5OT7_089 | 1/4/2248:2256 | No text annotation | homologous HL_7A0S_052 HL_11974.2 | |
| HL_5OT7_090 | 1/4/2264:2276 | No text annotation | homologous HL_7RQB_054 NA | |
| HL_5OT7_091 | 1/4/2303:2313 | No text annotation | homologous HL_4WF9_051 NA | |
| HL_5OT7_092 | 1/4/2324:2331 | Pseudoknot geometry | homologous HL_7RQB_056 NA | |
| HL_5OT7_093 | 1/4/2355:2362 | GNRA with extra cWW | homologous HL_7A0S_056 HL_87268.2 | |
| HL_5OT7_094 | 1/4/2374:2379 | GNRA | homologous HL_4WF9_054 HL_34789.3 | |
| HL_5OT7_095 | 1/4/2404:2413 | No text annotation | homologous HL_7A0S_058 HL_51853.2 | |
| HL_5OT7_096 | 1/4/2471:2479 | No text annotation | homologous HL_5J7L_193 NA | |
| HL_5OT7_097 | 1/4/2528:2535 | No text annotation | homologous HL_7RQB_061 NA | |
| HL_5OT7_098 | 1/4/2551:2557 | No text annotation | homologous HL_4WF9_058 HL_48677.1 | |
| HL_5OT7_099 | 1/4/2594:2599 | GNRA | homologous HL_7RQB_063 NA | |
| HL_5OT7_100 | 1/4/2658:2663 | GNRA | homologous HL_7RQB_064 NA | |
| HL_5OT7_101 | 1/4/2701:2706 | No text annotation | homologous HL_7RQB_065 NA | |
| HL_5OT7_102 | 1/4/2745:2759 | No text annotation | homologous HL_7RQB_066 NA | |
| HL_5OT7_103 | 1/4/2819:2827 | No text annotation | homologous HL_7RQB_068 NA | |
| HL_5OT7_104 | 1/4/2856:2861 | GNRA | homologous HL_7A0S_068 HL_34789.3 | |
| HL_5OT7_105 | 1/5/38:44 | No text annotation | geometric HL_2Y8W_001 HL_40612.1 | |
| HL_5OT7_106 | 1/5/86:91 | GNRA | homologous HL_7A0S_070 HL_34789.3 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5OT7_107 | No text annotation | ||
| HL_5OT7_002 | No text annotation | ||
| HL_5OT7_003 | GNRA | ||
| HL_5OT7_005 | No text annotation | ||
| HL_5OT7_009 | UNCG | ||
| HL_5OT7_010 | GNRA | ||
| HL_5OT7_011 | UNCG | ||
| HL_5OT7_012 | GNRA | ||
| HL_5OT7_015 | No text annotation | ||
| HL_5OT7_016 | GNRA | ||
| HL_5OT7_017 | No text annotation | ||
| HL_5OT7_018 | Mini UNCG | ||
| HL_5OT7_021 | tRNA D-loop | ||
| HL_5OT7_022 | No text annotation | ||
| HL_5OT7_023 | No text annotation | ||
| HL_5OT7_025 | T-loop related | ||
| HL_5OT7_027 | No text annotation | ||
| HL_5OT7_028 | No text annotation | ||
| HL_5OT7_029 | No text annotation | ||
| HL_5OT7_030 | No text annotation | ||
| HL_5OT7_033 | No text annotation | ||
| HL_5OT7_035 | T-loop with 2 stacked bulged bases | ||
| HL_5OT7_040 | No text annotation | ||
| HL_5OT7_044 | No text annotation | ||
| HL_5OT7_108 | No text annotation | ||
| HL_5OT7_048 | No text annotation | ||
| HL_5OT7_052 | GNRA | ||
| HL_5OT7_061 | No text annotation | ||
| HL_5OT7_064 | No text annotation | ||
| HL_5OT7_065 | No text annotation | ||
| HL_5OT7_066 | Externally structured | ||
| HL_5OT7_074 | No text annotation | ||
| HL_5OT7_083 | GNRA | ||
| HL_5OT7_085 | No text annotation | ||
| HL_5OT7_087 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5OT7_001 | 1/1/30:32, 1/1/552:553 | Single bulged G | homologous IL_6CZR_113 NA | |
| IL_5OT7_003 | 1/1/47:52, 1/1/359:361 | No text annotation | homologous IL_4LFB_003 IL_32983.2 | |
| IL_5OT7_178 | 1/1/129:131, 1/1/231:232 | Multiple bulged bases | homologous IL_4LFB_007 IL_75289.1 | |
| IL_5OT7_009 | 1/1/132:136, 1/1/227:230 | No text annotation | homologous IL_4LFB_008 IL_60988.2 | |
| IL_5OT7_012 | 1/1/242:247, 1/1/277:284 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.4 | |
| IL_5OT7_013 | 1/1/249:254, 1/1/272:275 | No text annotation | homologous IL_6CZR_357 NA | |
| IL_5OT7_014 | 1/1/292:293, 1/1/304:308 | C-loop | homologous IL_4LFB_013 IL_06671.1 | |
| IL_5OT7_015 | 1/1/367:369, 1/1/392:393 | Single bulged U | homologous IL_4LFB_014 IL_97561.3 | |
| IL_5OT7_016 | 1/1/371:375, 1/1/389:390 | C-loop | geometric IL_4LFB_015 IL_26900.1 | |
| IL_5OT7_017 | 1/1/375:376, 1/1/387:389 | Single bulged G | homologous IL_5J7L_019 NA | |
| IL_5OT7_019 | 1/1/446:450, 1/1/483:488 | 6x5 Sarcin-Ricin; G-bulge | geometric IL_6CZR_130 NA | |
| IL_5OT7_021 | 1/1/504:511, 1/1/540:541 | SSU/LSU pseudoknot | homologous IL_4LFB_020 IL_11411.1 | |
| IL_5OT7_022 | 1/1/515:521, 1/1/528:536 | Kink-turn related | homologous IL_4LFB_021 IL_52042.1 | |
| IL_5OT7_023 | 1/1/580:584, 1/1/757:761 | tSH-tHW-tHS | homologous IL_6CZR_135 NA | |
| IL_5OT7_026 | 1/1/605:612, 1/1/628:633 | No text annotation | homologous IL_4LFB_026 IL_04211.1 | |
| IL_5OT7_027 | 1/1/654:655, 1/1/751:754 | Major groove platform; stack outside cWW | homologous IL_4LFB_027 IL_74641.2 | |
| IL_5OT7_030 | 1/1/673:680, 1/1/710:717 | No text annotation | ||
| IL_5OT7_195 | 1/1/765:772, 1/1/807:812 | No text annotation | ||
| IL_5OT7_034 | 1/1/887:894, 1/1/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4LFB_034 IL_84044.1 | |
| IL_5OT7_035 | 1/1/922:923, 1/1/1393:1395 | Single bulged A | homologous IL_5J7L_039 NA | |
| IL_5OT7_036 | 1/1/925:927, 1/1/1390:1391 | Single bulged G | homologous IL_4LFB_036 IL_28408.2 | |
| IL_5OT7_050 | 1/1/1399:1401, 1/1/1501:1504 | No text annotation | geometric IL_5J7L_058 NA | |
| IL_5OT7_051 | 1/1/1401:1404, 1/1/1497:1501 | No text annotation | geometric IL_4V88_464 NA | |
| IL_5OT7_052 | 1/1/1405:1407, 1/1/1494:1496 | Isolated non-canonical cWW pair | geometric IL_4KNQ_002 IL_01003.3 | |
| IL_5OT7_054 | 1/1/1412:1414, 1/1/1486:1488 | Isolated non-canonical cWW pair | homologous IL_4LFB_059 IL_01003.3 | |
| IL_5OT7_055 | 1/1/1416:1419, 1/1/1481:1484 | Double sheared | homologous IL_6CZR_169 NA | |
| IL_5OT7_056 | 1/1/1431:1435, 1/1/1466:1469 | UAA/GAN variation | geometric IL_5TBW_023 NA | |
| IL_5OT7_057 | 1/1/1435:1437, 1/1/1464:1466 | Isolated non-canonical cWW pair | homologous IL_4LFB_063 IL_01003.3 | |
| IL_5OT7_058 | 1/1/1440:1443, 1/1/1459:1461 | No text annotation | homologous IL_4LFB_064 IL_34117.1 | |
| IL_5OT7_061 | 1/4/24:30, 1/4/510:516 | Triple sheared with non-canonical cWW | geometric IL_7RQB_001 NA | |
| IL_5OT7_062 | 1/4/36:37, 1/4/442:444 | Single bulged A | homologous IL_7RQB_002 NA | |
| IL_5OT7_183 | 1/4/41:43, 1/4/434:437 | Minor groove platform with extra cWW | homologous IL_4WF9_003 IL_82096.1 | |
| IL_5OT7_063 | 1/4/42:43, 1/4/434:436 | Minor groove platform | homologous IL_5J7L_247 NA | |
| IL_5OT7_064 | 1/4/81:85, 1/4/97:105 | Kink-turn | homologous IL_7RQB_004 NA | |
| IL_5OT7_065 | 1/4/183:185, 1/4/211:214 | No text annotation | geometric IL_4V9F_053 IL_49140.1 | |
| IL_5OT7_066 | 1/4/188:194, 1/4/201:208 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_006 NA | |
| IL_5OT7_067 | 1/4/239:245, 1/4/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_7RQB_007 NA | |
| IL_5OT7_184 | 1/4/272:272, 1/4/363:364 | Major groove platform | homologous IL_9DFE_008 IL_48076.8 | |
| IL_5OT7_197 | 1/4/272J:278, 1/4/362:363 | No text annotation | ||
| IL_5OT7_070 | 1/4/280:284, 1/4/357:360 | tSH-tHW | homologous IL_7RQB_011 NA | |
| IL_5OT7_072 | 1/4/293:295, 1/4/343:347 | No text annotation | homologous IL_7RQB_013 NA | |
| IL_5OT7_073 | 1/4/481:484, 1/4/496:509 | No text annotation | geometric IL_5J7L_255 NA | |
| IL_5OT7_074 | 1/4/564:566, 1/4/575:577 | Isolated non-canonical cWW pair | homologous IL_7A0S_011 IL_71625.2 | |
| IL_5OT7_075 | 1/4/606:610, 1/4/618:622 | AAA cross-strand stack | homologous IL_4WF9_019 IL_66798.3 | |
| IL_5OT7_076 | 1/4/672:674, 1/4/806:808 | No text annotation | homologous IL_7RQB_017 NA | |
| IL_5OT7_077 | 1/4/674:678, 1/4/799:806 | tHW-tHW cross-strand stack | geometric IL_7A0S_015 IL_73855.1 | |
| IL_5OT7_078 | 1/4/697:698, 1/4/763:765 | Single bulged A | homologous IL_5J7L_261 NA | |
| IL_5OT7_079 | 1/4/702:707, 1/4/724:730 | No text annotation | geometric IL_4LFB_055 IL_57885.2 | |
| IL_5OT7_080 | 1/4/737:738, 1/4/758:760 | Single stack bend | geometric IL_7A0S_083 IL_15011.2 | |
| IL_5OT7_081 | 1/4/738:741, 1/4/756:758 | Major groove platform with extra cWW | geometric IL_5TBW_031 NA | |
| IL_5OT7_082 | 1/4/775:777, 1/4/787:791 | Multiple bulged bases | homologous IL_5J7L_265 NA | |
| IL_5OT7_083 | 1/4/837:838, 1/4/940:942 | Single stack bend | homologous IL_7RQB_024 NA | |
| IL_5OT7_084 | 1/4/844:846, 1/4/931:934 | Intercalated cWW | homologous IL_7RQB_025 NA | |
| IL_5OT7_085 | 1/4/846:850, 1/4/927:931 | No text annotation | geometric IL_7RQB_026 NA | |
| IL_5OT7_198 | 1/4/858:862, 1/4/915:919 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_7A0S_111 IL_38862.5 | |
| IL_5OT7_087 | 1/4/862:863, 1/4/913:915 | Minor groove platform | geometric IL_4V9F_034 IL_34520.3 | |
| IL_5OT7_088 | 1/4/864:868, 1/4/909:912 | C-loop | homologous IL_7RQB_029 NA | |
| IL_5OT7_090 | 1/4/952:954, 1/4/963:965 | Isolated non-canonical cWW pair | homologous IL_7A0S_031 IL_01003.3 | |
| IL_5OT7_091 | 1/4/994:996, 1/4/1159:1160 | Single bulged C | homologous IL_7RQB_035 NA | |
| IL_5OT7_092 | 1/4/998:1002, 1/4/1153:1157 | UAA/GAN | homologous IL_7A0S_033 IL_08938.1 | |
| IL_5OT7_093 | 1/4/1004:1011, 1/4/1150:1151 | SSU/LSU pseudoknot | geometric IL_4WF9_037 IL_11411.1 | |
| IL_5OT7_094 | 1/4/1011:1013, 1/4/1149:1150 | Single bulged U | homologous IL_7RQB_038 NA | |
| IL_5OT7_095 | 1/4/1018:1024, 1/4/1140:1144 | Kink-turn related | geometric IL_4WF9_039 IL_57188.6 | |
| IL_5OT7_096 | 1/4/1024:1030, 1/4/1124:1140 | No text annotation | homologous IL_7A0S_037 IL_50715.4 | |
| IL_5OT7_097 | 1/4/1031:1034, 1/4/1121:1123 | Isolated non-canonical cWW pair | homologous IL_4WF9_041 IL_76400.1 | |
| IL_5OT7_098 | 1/4/1040:1042, 1/4/1113:1115 | Isolated non-canonical cWW pair | geometric IL_4V9K_064 IL_01003.3 | |
| IL_5OT7_102 | 1/4/1196:1198, 1/4/1247:1250 | Isolated cWS basepair | homologous IL_7A0S_041 IL_42997.5 | |
| IL_5OT7_103 | 1/4/1202:1206, 1/4/1240:1243 | No text annotation | homologous IL_7RQB_046 NA | |
| IL_5OT7_104 | 1/4/1208:1215, 1/4/1234:1238 | Kink-turn | homologous IL_7RQB_047 NA | |
| IL_5OT7_105 | 1/4/1219:1221, 1/4/1229:1230 | Single bulged A | homologous IL_7RQB_048 NA | |
| IL_5OT7_106 | 1/4/1262:1269, 1/4/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_049 NA | |
| IL_5OT7_107 | 1/4/1319:1323, 1/4/1331:1333 | C-loop | homologous IL_5J7L_291 NA | |
| IL_5OT7_108 | 1/4/1351:1355, 1/4/1376:1380 | UAA/GAN | homologous IL_7RQB_052 NA | |
| IL_5OT7_185 | 1/4/1357:1361, 1/4/1370:1374 | tSH-tHW-tHS | homologous IL_5J7L_293 NA | |
| IL_5OT7_111 | 1/4/1417:1421, 1/4/1577:1581 | UAA/GAN | homologous IL_5J7L_295 NA | |
| IL_5OT7_112 | 1/4/1433:1435, 1/4/1557:1560 | Isolated tWW turn | homologous IL_7RQB_056 NA | |
| IL_5OT7_113 | 1/4/1437:1440, 1/4/1551:1555 | tSH-tHW | homologous IL_7RQB_057 NA | |
| IL_5OT7_114 | 1/4/1448:1450, 1/4/1462:1463 | Single stack bend | homologous IL_7RQB_058 NA | |
| IL_5OT7_115 | 1/4/1450A:1451, 1/4/1459:1461 | Single bulged A | geometric IL_6D3P_004 NA | |
| IL_5OT7_116 | 1/4/1469:1473, 1/4/1518:1523 | UAA/GAN variation | homologous IL_7RQB_060 NA | |
| IL_5OT7_117 | 1/4/1481:1482, 1/4/1506:1510 | No text annotation | geometric IL_7RQB_061 NA | |
| IL_5OT7_120 | 1/4/1526:1530, 1/4/1539:1546 | No text annotation | ||
| IL_5OT7_121 | 1/4/1651:1656, 1/4/2004:2006 | No text annotation | homologous IL_4WF9_062 IL_12566.5 | |
| IL_5OT7_186 | 1/4/1663:1665, 1/4/1995:1997 | Isolated tWW turn | homologous IL_4WF9_063 IL_10432.1 | |
| IL_5OT7_123 | 1/4/1666:1669, 1/4/1993:1994 | Major groove platform; stack outside cWW | geometric IL_1G1X_001 NA | |
| IL_5OT7_187 | 1/4/1666:1674, 1/4/1990:1994 | No text annotation | homologous IL_7A0S_109 IL_80252.1 | |
| IL_5OT7_124 | 1/4/1669:1674, 1/4/1990:1993 | Intercalated tWH | homologous IL_7A0S_062 IL_28217.1 | |
| IL_5OT7_125 | 1/4/1686:1691, 1/4/1696:1702 | tSH-tSH-tHH-tHS | geometric IL_7RQB_068 NA | |
| IL_5OT7_126 | 1/4/1770:1771, 1/4/1980:1982 | Single bulged A | homologous IL_7RQB_069 NA | |
| IL_5OT7_127 | 1/4/1798:1804, 1/4/1813:1821 | Kink-turn related | homologous IL_7A0S_065 IL_17069.6 | |
| IL_5OT7_128 | 1/4/1837:1840, 1/4/1902:1904 | No text annotation | ||
| IL_5OT7_129 | 1/4/1841:1842, 1/4/1898:1901 | Major groove intercalation | homologous IL_5J7L_315 NA | |
| IL_5OT7_188 | 1/4/1846:1849, 1/4/1893:1894 | Minor groove platform | homologous IL_9DFE_073 IL_24264.1 | |
| IL_5OT7_131 | 1/4/1851:1855, 1/4/1887:1891 | UAA/GAN with extra stack | homologous IL_7RQB_074 NA | |
| IL_5OT7_132 | 1/4/1856:1860, 1/4/1882:1886 | Triple sheared | homologous IL_7RQB_075 NA | |
| IL_5OT7_133 | 1/4/1933:1934, 1/4/1964:1967 | Bulged stacked bases | geometric IL_7A0S_071 IL_24886.2 | |
| IL_5OT7_134 | 1/4/1934:1945, 1/4/1961:1964 | No text annotation | homologous IL_4WF9_077 IL_84014.1 | |
| IL_5OT7_135 | 1/4/2050:2052, 1/4/2617:2618 | Major groove platform | homologous IL_5J7L_320 NA | |
| IL_5OT7_136 | 1/4/2054:2057, 1/4/2611:2615 | No text annotation | homologous IL_7A0S_074 IL_70335.1 | |
| IL_5OT7_137 | 1/4/2067:2069, 1/4/2442:2443 | Single bulged U | homologous IL_7RQB_080 NA | |
| IL_5OT7_138 | 1/4/2070:2071, 1/4/2438:2441 | Minor groove platform | homologous IL_7RQB_081 NA | |
| IL_5OT7_139 | 1/4/2081:2083, 1/4/2236:2239 | Isolated tHS basepair with bulges | homologous IL_7RQB_082 NA | |
| IL_5OT7_140 | 1/4/2085:2087, 1/4/2232:2234 | No text annotation | homologous IL_7RQB_083 NA | |
| IL_5OT7_148 | 1/4/2297:2299, 1/4/2317:2321 | Isolated tHS basepair with bulges | homologous IL_4WF9_086 IL_14250.1 | |
| IL_5OT7_149 | 1/4/2350:2353, 1/4/2364:2367 | Double sheared | homologous IL_7RQB_089 NA | |
| IL_5OT7_150 | 1/4/2401:2403, 1/4/2414:2415 | Major groove platform | homologous IL_7RQB_090 NA | |
| IL_5OT7_151 | 1/4/2454:2455, 1/4/2496:2498 | Major groove platform | homologous IL_4WF9_090 IL_48076.8 | |
| IL_5OT7_152 | 1/4/2457:2459, 1/4/2493:2494 | Major groove platform | homologous IL_7A0S_085 IL_48076.8 | |
| IL_5OT7_153 | 1/4/2459:2461, 1/4/2489:2493 | Major groove minor groove platform with extra cWW | geometric IL_7RQB_094 NA | |
| IL_5OT7_154 | 1/4/2466:2470, 1/4/2480:2484 | Double sheared with non-canonical cWW | homologous IL_7A0S_087 IL_87767.2 | |
| IL_5OT7_155 | 1/4/2507:2508, 1/4/2580:2582 | Major groove platform | homologous IL_7RQB_096 NA | |
| IL_5OT7_156 | 1/4/2510:2512, 1/4/2574:2578 | Isolated non-canonical cWW with bulges | homologous IL_4WF9_095 IL_68118.3 | |
| IL_5OT7_157 | 1/4/2512:2513, 1/4/2571:2574 | Multiple bulged bases | geometric IL_7RQB_098 NA | |
| IL_5OT7_158 | 1/4/2522:2523, 1/4/2540:2543 | Major groove platform with intercalation | homologous IL_5J7L_342 NA | |
| IL_5OT7_159 | 1/4/2591:2592, 1/4/2601:2603 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_5OT7_160 | 1/4/2636:2640, 1/4/2774:2782 | tSH-tHS-tHW | geometric IL_7RQB_102 NA | |
| IL_5OT7_161 | 1/4/2640:2642, 1/4/2773:2774 | Single stack bend | geometric IL_7KGA_003 IL_15011.2 | |
| IL_5OT7_162 | 1/4/2642:2643, 1/4/2771:2773 | Single stack bend | geometric IL_5J7L_032 NA | |
| IL_5OT7_163 | 1/4/2652:2658, 1/4/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_5J7L_346 NA | |
| IL_5OT7_164 | 1/4/2680:2684, 1/4/2725:2727 | C-loop | homologous IL_5J7L_347 NA | |
| IL_5OT7_165 | 1/4/2687:2691, 1/4/2718:2722 | UAA/GAN related, with intercalation | homologous IL_4WF9_102 IL_82016.1 | |
| IL_5OT7_166 | 1/4/2695:2696, 1/4/2711:2714 | Multiple bulged bases | homologous IL_7A0S_097 IL_44609.2 | |
| IL_5OT7_167 | 1/4/2737:2742, 1/4/2762:2767 | UAA/GAN with extra cWW | homologous IL_7A0S_098 IL_91079.1 | |
| IL_5OT7_168 | 1/4/2838:2839, 1/4/2878:2880 | Single bulged C | homologous IL_7RQB_108 NA | |
| IL_5OT7_169 | 1/4/2843:2845, 1/4/2871:2874 | Decoding loop related | homologous IL_7A0S_100 IL_05502.1 | |
| IL_5OT7_170 | 1/4/2847:2852, 1/4/2865:2869 | tHS double platform | homologous IL_7RQB_110 NA | |
| IL_5OT7_172 | 1/5/23:28, 1/5/56:60 | No text annotation | homologous IL_5J7L_356 NA | |
| IL_5OT7_174 | 1/5/34:38, 1/5/44:48 | Symmetric double minor groove platform | homologous IL_5TBW_376 NA | |
| IL_5OT7_175 | 1/5/71:79, 1/5/98:106 | Bacterial 5S Loop E | homologous IL_7A0S_106 IL_71138.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5OT7_176 | Single bulged A | ||
| IL_5OT7_002 | Isolated non-canonical cWW pair | ||
| IL_5OT7_004 | Minor groove platform | ||
| IL_5OT7_177 | No text annotation | ||
| IL_5OT7_005 | Multiple bulged bases | ||
| IL_5OT7_006 | Isolated non-canonical cWW pair | ||
| IL_5OT7_007 | No text annotation | ||
| IL_5OT7_008 | Isolated non-canonical cWW pair | ||
| IL_5OT7_010 | No text annotation | ||
| IL_5OT7_011 | No text annotation | ||
| IL_5OT7_179 | Single bulged G, near cWW | ||
| IL_5OT7_018 | No text annotation | ||
| IL_5OT7_020 | No text annotation | ||
| IL_5OT7_024 | Major groove platform | ||
| IL_5OT7_025 | Major groove minor groove platform; mini C-loop | ||
| IL_5OT7_028 | Major groove platform | ||
| IL_5OT7_029 | No text annotation | ||
| IL_5OT7_194 | Tandem non-canonical cWW pairs | ||
| IL_5OT7_031 | No text annotation | ||
| IL_5OT7_032 | Left turn | ||
| IL_5OT7_033 | tSH-tHW-tHS | ||
| IL_5OT7_180 | tSH-tHW-tHS-cWW | ||
| IL_5OT7_037 | No text annotation | ||
| IL_5OT7_038 | No text annotation | ||
| IL_5OT7_039 | No text annotation | ||
| IL_5OT7_040 | Single bulged U | ||
| IL_5OT7_196 | Multiple bulged bases | ||
| IL_5OT7_041 | No text annotation | ||
| IL_5OT7_042 | Minor groove platform | ||
| IL_5OT7_043 | Single bulged U | ||
| IL_5OT7_044 | Isolated non-canonical cWW pair | ||
| IL_5OT7_181 | No text annotation | ||
| IL_5OT7_045 | No text annotation | ||
| IL_5OT7_046 | Single stack bend | ||
| IL_5OT7_047 | No text annotation | ||
| IL_5OT7_048 | Single stack bend | ||
| IL_5OT7_049 | No text annotation | ||
| IL_5OT7_053 | Isolated non-canonical cWW pair | ||
| IL_5OT7_059 | Single stack bend | ||
| IL_5OT7_060 | Single stack bend | ||
| IL_5OT7_182 | Isolated non-canonical cWW pair | ||
| IL_5OT7_068 | No text annotation | ||
| IL_5OT7_069 | No text annotation | ||
| IL_5OT7_071 | Isolated tHS basepair with bulges | ||
| IL_5OT7_086 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_5OT7_089 | Double sheared with non-canonical cWW | ||
| IL_5OT7_099 | No text annotation | ||
| IL_5OT7_100 | No text annotation | ||
| IL_5OT7_101 | No text annotation | ||
| IL_5OT7_199 | No text annotation | ||
| IL_5OT7_109 | tSH-tHW-tHS-cWW | ||
| IL_5OT7_110 | No text annotation | ||
| IL_5OT7_118 | No text annotation | ||
| IL_5OT7_119 | Single bulged A | ||
| IL_5OT7_122 | No text annotation | ||
| IL_5OT7_130 | Minor groove platform with extra cWW | ||
| IL_5OT7_189 | No text annotation | ||
| IL_5OT7_141 | No text annotation | ||
| IL_5OT7_142 | No text annotation | ||
| IL_5OT7_143 | No text annotation | ||
| IL_5OT7_190 | Multiple bulged bases | ||
| IL_5OT7_144 | No text annotation | ||
| IL_5OT7_145 | No text annotation | ||
| IL_5OT7_191 | No text annotation | ||
| IL_5OT7_146 | No text annotation | ||
| IL_5OT7_147 | No text annotation | ||
| IL_5OT7_192 | No text annotation | ||
| IL_5OT7_171 | Isolated non-canonical cWW pair | ||
| IL_5OT7_173 | Major groove minor groove platform; mini C-loop | ||
| IL_5OT7_193 | Isolated non-canonical cWW pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_5OT7_001 | 1/1/46:47, 1/1/361:367, 1/1/393:395 | No text annotation | homologous J3_6CZR_015 NA | |
| J3_5OT7_002 | 1/1/586:588, 1/1/651:654, 1/1/754:755 | No text annotation | homologous J3_5J7L_002 NA | |
| J3_5OT7_023 | 1/1/586:588, 1/1/651:655, 1/1/751:755 | No text annotation | homologous J3_4LFB_015 J3_17385.5 | |
| J3_5OT7_004 | 1/1/826:829, 1/1/857:861, 1/1/868:874 | No text annotation | homologous J3_6CZR_018 NA | |
| J3_5OT7_032 | 1/1/948:962, 1/1/973:984, 1/1/1221:1233 | No text annotation | ||
| J3_5OT7_005 | 1/1/954:962, 1/1/973:985, 1/1/1220:1226 | No text annotation | homologous J3_6CZR_020 NA | |
| J3_5OT7_026 | 1/1/1063:1068, 1/1/1107:1115, 1/1/1185:1193 | No text annotation | ||
| J3_5OT7_027 | 1/1/1073:1074, 1/1/1083:1086, 1/1/1099:1102 | No text annotation | homologous J3_4LFB_017 J3_11018.1 | |
| J3_5OT7_008 | 1/4/30:31, 1/4/474:481, 1/4/509:510 | No text annotation | homologous J3_7RQB_001 NA | |
| J3_5OT7_028 | 1/4/30:31, 1/4/474:484, 1/4/496:510 | No text annotation | homologous J3_4WF9_011 J3_17917.1 | |
| J3_5OT7_029 | 1/4/32:35, 1/4/445:461, 1/4/468:473 | No text annotation | homologous J3_9DFE_003 J3_07616.1 | |
| J3_5OT7_009 | 1/4/56:57, 1/4/70:76, 1/4/110:114 | No text annotation | homologous J3_7RQB_002 NA | |
| J3_5OT7_010 | 1/4/269:271B, 1/4/271V:272B, 1/4/366:370 | No text annotation | homologous J3_7RQB_003 NA | |
| J3_5OT7_030 | 1/4/683:689, 1/4/773:775, 1/4/791:794 | No text annotation | homologous J3_7A0S_004 J3_46658.1 | |
| J3_5OT7_012 | 1/4/698:700, 1/4/732:737, 1/4/760:763 | No text annotation | homologous J3_4WF9_003 J3_69816.1 | |
| J3_5OT7_014 | 1/4/1298:1303, 1/4/1625:1627, 1/4/1639:1642 | No text annotation | homologous J3_7A0S_006 J3_32852.7 | |
| J3_5OT7_015 | 1/4/1306:1309, 1/4/1605:1611, 1/4/1620:1622 | No text annotation | homologous J3_5J7L_042 NA | |
| J3_5OT7_016 | 1/4/1344:1350, 1/4/1381:1385, 1/4/1402:1403 | No text annotation | homologous J3_7RQB_009 NA | |
| J3_5OT7_031 | 1/4/1423:1429, 1/4/1564:1565, 1/4/1568:1575 | No text annotation | ||
| J3_5OT7_017 | 1/4/2091:2093, 1/4/2196:2200, 1/4/2223:2228 | No text annotation | homologous J3_7RQB_010 NA | |
| J3_5OT7_018 | 1/4/2282:2284, 1/4/2384:2396, 1/4/2420:2427 | No text annotation | ||
| J3_5OT7_019 | 1/4/2295:2297, 1/4/2321:2323, 1/4/2332:2337 | No text annotation | homologous J3_7RQB_011 NA | |
| J3_5OT7_020 | 1/4/2517:2520, 1/4/2545:2547, 1/4/2561:2567 | No text annotation | homologous J3_7RQB_012 NA | |
| J3_5OT7_021 | 1/4/2814:2815, 1/4/2831:2836, 1/4/2882:2886 | No text annotation | homologous J3_7RQB_014 NA | |
| J3_5OT7_022 | 1/5/11:18, 1/5/65:69, 1/5/108:110 | No text annotation | ||
| J4_5OT7_001 | 1/1/115:122, 1/1/239:240, 1/1/286:289, 1/1/311:312 | No text annotation | homologous J4_4LFB_001 J4_90044.1 | |
| J4_5OT7_002 | 1/1/142:144, 1/1/178:183, 1/1/194:198, 1/1/219:221 | No text annotation | homologous J4_6CZR_012 NA | |
| J4_5OT7_003 | 1/1/569:577, 1/1/764:765, 1/1/812:821, 1/1/879:881 | No text annotation | ||
| J4_5OT7_018 | 1/1/569:577, 1/1/764:772, 1/1/807:821, 1/1/879:881 | No text annotation | ||
| J4_5OT7_006 | 1/1/985:1008, 1/1/1021:1025, 1/1/1034:1048, 1/1/1209:1220 | No text annotation | ||
| J4_5OT7_007 | 1/2/4:12, 1/2/24:29, 1/2/42:49, 1/2/65:69 | No text annotation | ||
| J4_5OT7_008 | 1/4/268:269, 1/4/370:375, 1/4/399:406, 1/4/421:424 | No text annotation | homologous J4_9DFE_001 J4_94698.1 | |
| J4_5OT7_009 | 1/4/297:301, 1/4/316:319, 1/4/323:325, 1/4/337:341 | No text annotation | homologous J4_7A0S_002 J4_16174.1 | |
| J4_5OT7_010 | 1/4/601:604, 1/4/624:628, 1/4/635:638, 1/4/650:656 | No text annotation | ||
| J4_5OT7_011 | 1/4/1270:1276, 1/4/1294:1295, 1/4/1645:1648, 1/4/2009:2010 | No text annotation | homologous J4_9DFE_003 J4_64571.6 | |
| J4_5OT7_020 | 1/4/1310:1314, 1/4/1338:1343, 1/4/1404:1405, 1/4/1597:1604 | No text annotation | homologous J4_9DFE_004 J4_77353.1 | |
| J4_5OT7_013 | 1/4/1444:1445, 1/4/1466:1467, 1/4/1525:1526, 1/4/1546:1547 | No text annotation | homologous J4_9DFE_006 J4_75575.1 | |
| J4_5OT7_014 | 1/4/1772:1776, 1/4/1788:1792, 1/4/1827:1830, 1/4/1975:1979 | No text annotation | homologous J4_5J7L_025 NA | |
| J4_5OT7_021 | 1/4/1833:1837, 1/4/1904:1907, 1/4/1923:1933, 1/4/1967:1972 | No text annotation | ||
| J4_5OT7_016 | 1/4/2285:2289, 1/4/2343:2347, 1/4/2370:2372, 1/4/2381:2383 | No text annotation | homologous J4_9DFE_009 J4_98139.1 | |
| J4_5OT7_017 | 1/4/2643:2646, 1/4/2674:2676, 1/4/2731:2735, 1/4/2769:2771 | No text annotation | homologous J4_9DFE_010 J4_77044.5 | |
| J5_5OT7_001 | 1/1/36:39, 1/1/403:406, 1/1/436:442, 1/1/492:500, 1/1/545:548 | No text annotation | homologous J5_4LFB_001 J5_70703.1 | |
| J5_5OT7_008 | 1/1/58:61, 1/1/106:113, 1/1/314:316, 1/1/337:339, 1/1/350:354 | No text annotation | homologous J5_4LFB_002 J5_58574.1 | |
| J5_5OT7_003 | 1/4/47:54, 1/4/116:121, 1/4/130:131, 1/4/148:150, 1/4/176:178 | No text annotation | homologous J5_5J7L_013 NA | |
| J5_5OT7_004 | 1/4/268:271, 1/4/271:272, 1/4/366:375, 1/4/399:406, 1/4/421:424 | No text annotation | ||
| J5_5OT7_005 | 1/4/584:589, 1/4/668:671, 1/4/809:812, 1/4/1195:1196, 1/4/1250:1256 | No text annotation | homologous J5_9DFE_004 J5_74302.6 | |
| J5_5OT7_006 | 1/4/1674:1682, 1/4/1706:1707, 1/4/1751:1752, 1/4/1756:1764, 1/4/1988:1990 | No text annotation | homologous J5_9DFE_005 J5_99177.1 | |
| J5_5OT7_007 | 1/4/2057:2064, 1/4/2446:2454, 1/4/2498:2507, 1/4/2582:2588, 1/4/2606:2611 | No text annotation | ||
| J6_5OT7_001 | 1/4/44:45, 1/4/179:183, 1/4/214:224, 1/4/231:235, 1/4/262:266, 1/4/426:433 | No text annotation | ||
| J6_5OT7_002 | 1/4/2074:2077, 1/4/2243:2246, 1/4/2258:2259, 1/4/2281:2284, 1/4/2384:2396, 1/4/2420:2435 | No text annotation | ||
| J7_5OT7_001 | 1/4/817:822, 1/4/835:836, 1/4/943:946, 1/4/971:976, 1/4/987:991, 1/4/1163:1164, 1/4/1185:1190 | No text annotation | ||
| J10_5OT7_001 | 1/4/7:15, 1/4/525:533, 1/4/560:564, 1/4/577:579, 1/4/1261:1262, 1/4/2017:2023, 1/4/2040:2043, 1/4/2625:2630, 1/4/2788:2811, 1/4/2889:2896 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_5OT7_003 | No text annotation | ||
| J3_5OT7_024 | No text annotation | ||
| J3_5OT7_025 | No text annotation | ||
| J3_5OT7_006 | No text annotation | ||
| J3_5OT7_007 | No text annotation | ||
| J3_5OT7_011 | No text annotation | ||
| J3_5OT7_013 | No text annotation | ||
| J4_5OT7_004 | No text annotation | ||
| J4_5OT7_005 | No text annotation | ||
| J4_5OT7_019 | No text annotation | ||
| J4_5OT7_012 | No text annotation | ||
| J4_5OT7_015 | No text annotation | ||
| J5_5OT7_002 | No text annotation |
Coloring options: