HL_5OT7_085

3D structure

PDB id

5OT7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation factor G-ribosome complex captures in the absence of inhibitors.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

5OT7|1|4|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5OT7_085 not in the Motif Atlas

Homologous match to HL_4WF9_046

Geometric discrepancy: 0.1652

The information below is about HL_4WF9_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61418.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

5OT7|1|4|G|1949
5OT7|1|4|G|1950
5OT7|1|4|U|1951
5OT7|1|4|A|1952
5OT7|1|4|A|1953
5OT7|1|4|G|1954
5OT7|1|4|U|1955
5OT7|1|4|U|1956
5OT7|1|4|C|1957

Current chains

Chain 4

23S Ribosomal RNA

Nearby chains

Chain 1

Small subunit ribosomal RNA; SSU rRNA

Chain p

50S ribosomal protein L14