HL_5OT7_103

3D structure

PDB id

5OT7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation factor G-ribosome complex captures in the absence of inhibitors.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAAGACCAC

Length

9 nucleotides

Bulged bases

5OT7|1|4|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5OT7_103 not in the Motif Atlas

Homologous match to HL_7RQB_068

Geometric discrepancy: 0.1215

The information below is about HL_7RQB_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

5OT7|1|4|G|2819
5OT7|1|4|A|2820
5OT7|1|4|A|2821
5OT7|1|4|G|2822
5OT7|1|4|A|2823
5OT7|1|4|C|2824
5OT7|1|4|C|2825
5OT7|1|4|A|2826
5OT7|1|4|C|2827

Current chains

Chain 4

23S Ribosomal RNA

Nearby chains

Chain h

50S ribosomal protein L3

Chain s

50S ribosomal protein L17

Chain u

50S ribosomal protein L19