HL_5SWD_004

3D structure

PDB id

5SWD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the adenine riboswitch aptamer domain in an intermediate-bound state

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

AUGAUAUGGUU

Length

11 nucleotides

Bulged bases (A, C, G, U)

36U

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_04171.5

Basepair signature

cWW-cWW-F-F-cSS-F-F

Number of instances in this motif group

7

Unit IDs

5SWD|1|B|A|30
5SWD|1|B|U|31
5SWD|1|B|G|32
5SWD|1|B|A|33
5SWD|1|B|U|34
5SWD|1|B|A|35
5SWD|1|B|U|36
5SWD|1|B|G|37
5SWD|1|B|G|38
5SWD|1|B|U|39
5SWD|1|B|U|40

Current chains

Chain B

Vibrio vulnificus strain 93U204 chromosome II, adenine riboswitch aptamer domain

Nearby chains