HL_5T16_004

3D structure

PDB id

5T16 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of yeast RNase III (Rnt1p) complexed with a non-hydrolyzable RNA substrate analog

Experimental method

X-RAY DIFFRACTION

Resolution

2.78 Å

Loop

Sequence

GAGUCC

Length

6 nucleotides

Bulged bases

5T16|1|P|A|17, 5T16|1|P|G|18, 5T16|1|P|C|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T16_004 not in the Motif Atlas

Geometric match to HL_5T16_002

Geometric discrepancy: 0.053

The information below is about HL_5T16_002

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_56334.1

Basepair signature

cWW-F

Number of instances in this motif group

16

Unit IDs

5T16|1|P|G|16
5T16|1|P|A|17
5T16|1|P|G|18
5T16|1|P|U|19
5T16|1|P|C|20
5T16|1|P|C|21

Current chains

Chain P

RNA substrate analog

Nearby chains

Chain I

Ribonuclease 3

Chain J

Ribonuclease 3

Chain M

Ribonuclease 3

Chain N

Ribonuclease 3