HL_5T2A_003

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUUC

Length

5 nucleotides

Bulged bases

5T2A|1|2|U|136, 5T2A|1|2|U|137

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T2A_003 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.1409

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

5T2A|1|2|G|134
5T2A|1|2|U|135
5T2A|1|2|U|136
5T2A|1|2|U|137
5T2A|1|2|C|138

Current chains

Chain 2

18S rRNA

Nearby chains