RNA 3D Hub //

5T2A Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_5T2A_0011/2/7:17No text annotation
homologous
HL_4V88_186
NA
HL_5T2A_1141/2/70:79No text annotation
HL_5T2A_0021/2/72:77No text annotation
HL_5T2A_0041/2/159:165GNRA
geometric
HL_5Y7M_002
HL_34789.4
HL_5T2A_0061/2/265:272T-loop related
geometric
HL_5J7L_024
NA
HL_5T2A_0071/2/291:298T-loop with 1 bulged base
homologous
HL_4V88_191
NA
HL_5T2A_0081/2/321:328No text annotation
geometric
HL_4V88_198
NA
HL_5T2A_0091/2/374:382GNRA related
homologous
HL_4V88_193
NA
HL_5T2A_0101/2/411:416No text annotation
homologous
HL_4V88_194
NA
HL_5T2A_0111/2/436:447No text annotation
homologous
HL_4V88_195
NA
HL_5T2A_0121/2/457:462UNCG
homologous
HL_4V88_196
NA
HL_5T2A_0131/2/493:504No text annotation
homologous
HL_4V88_197
NA
HL_5T2A_0151/2/564:577No text annotation
HL_5T2A_0161/2/618:623GNRA variation
homologous
HL_4V88_200
NA
HL_5T2A_0181/2/865:873No text annotation
homologous
HL_4V88_203
NA
HL_5T2A_0191/2/878:883No text annotation
homologous
HL_4V88_204
NA
HL_5T2A_0201/2/932:938No text annotation
geometric
HL_4WF9_003
HL_75660.7
HL_5T2A_0221/2/1147:1156No text annotation
homologous
HL_4V88_206
NA
HL_5T2A_0231/2/1184:1189GNRA
homologous
HL_4V88_207
NA
HL_5T2A_0241/2/1244:1254No text annotation
homologous
HL_4V88_208
NA
HL_5T2A_0261/2/1436:1441GNRA
homologous
HL_4V88_210
NA
HL_5T2A_0271/2/1475:1480GNRA
homologous
HL_4V88_211
NA
HL_5T2A_0281/2/1542:1551No text annotation
homologous
HL_4V88_212
NA
HL_5T2A_1191/2/1592:1601GNRA wlth extra near cWW
homologous
HL_8P9A_216
HL_98423.3
HL_5T2A_0301/2/1650:1655GNRA
homologous
HL_4V88_214
NA
HL_5T2A_0311/2/1662:1671No text annotation
HL_5T2A_1161/2/1798:1805No text annotation
HL_5T2A_1201/2/1914:1924No text annotation
HL_5T2A_0351/2/2009:2019No text annotation
geometric
HL_5J7L_029
NA
HL_5T2A_0371/2/2181:2186GNRA variation
homologous
HL_4V88_222
NA
HL_5T2A_0381/A/36:43No text annotation
homologous
HL_5TBW_001
NA
HL_5T2A_0391/A/67:72No text annotation
homologous
HL_8C3A_002
NA
HL_5T2A_0401/A/89:95No text annotation
homologous
HL_8C3A_003
NA
HL_5T2A_0411/A/129:136No text annotation
HL_5T2A_0421/A/204:212Mini UNCG
geometric
HL_4OOG_001
HL_12626.2
HL_5T2A_1211/A/222:231Pseudoknot geometry
geometric
HL_4QLM_002
HL_00911.2
HL_5T2A_0441/A/245:249No text annotation
homologous
HL_8C3A_006
NA
HL_5T2A_0451/A/253:261T-loop with unstacked turn
homologous
HL_5TBW_007
NA
HL_5T2A_0461/A/315:324No text annotation
homologous
HL_5TBW_008
NA
HL_5T2A_0471/A/341:350Pseudoknot geometry
homologous
HL_5TBW_009
NA
HL_5T2A_0481/A/397:402GNRA
homologous
HL_8C3A_010
NA
HL_5T2A_0491/A/423:428GNRA
homologous
HL_5TBW_011
NA
HL_5T2A_0501/A/520:531No text annotation
HL_5T2A_1221/A/672:681T-loop with 2 stacked bulged bases
homologous
HL_8CRE_013
NA
HL_5T2A_1231/A/720:731No text annotation
HL_5T2A_0531/A/745:750GNRA
homologous
HL_5TBW_016
NA
HL_5T2A_0541/A/758:764Mini UNCG
geometric
HL_4YAZ_004
HL_90436.3
HL_5T2A_0571/A/895:900GNRA
homologous
HL_5TBW_019
NA
HL_5T2A_0581/A/927:936No text annotation
homologous
HL_8P9A_132
HL_50204.1
HL_5T2A_0591/A/961:969No text annotation
homologous
HL_5TBW_021
NA
HL_5T2A_0601/A/1009:1014Externally structured
homologous
HL_5TBW_022
NA
HL_5T2A_0621/A/1130:1136No text annotation
geometric
HL_2ZNI_001
HL_75660.7
HL_5T2A_0631/A/1183:1189GNRA
homologous
HL_5TBW_025
NA
HL_5T2A_0641/A/1205:1212No text annotation
homologous
HL_5TBW_026
NA
HL_5T2A_0671/A/1494:1499GNRA
homologous
HL_5TBW_030
NA
HL_5T2A_0691/A/1613:1619Pseudoknot geometry with 3' bulge
homologous
HL_5TBW_032
NA
HL_5T2A_0701/A/1651:1658T-loop with 2 stacked bulged bases
geometric
HL_5TBW_005
NA
HL_5T2A_0721/A/1751:1761No text annotation
homologous
HL_8C3A_035
NA
HL_5T2A_0731/B/26:33No text annotation
homologous
HL_5TBW_041
NA
HL_5T2A_0741/B/44:50GNRA
homologous
HL_8C3A_042
NA
HL_5T2A_0751/B/106:111UNCG
geometric
HL_4LFB_031
HL_61337.3
HL_5T2A_0761/B/318:328No text annotation
homologous
HL_5TBW_046
NA
HL_5T2A_0771/B/347:353No text annotation
geometric
HL_2ZNI_001
HL_75660.7
HL_5T2A_0781/B/402:409No text annotation
geometric
HL_6CF2_001
HL_92598.1
HL_5T2A_0791/B/436:446No text annotation
homologous
HL_8C3A_049
NA
HL_5T2A_0801/B/475:483No text annotation
homologous
HL_8C3A_050
NA
HL_5T2A_0811/B/552:561No text annotation
homologous
HL_5TBW_051
NA
HL_5T2A_0821/B/979:987No text annotation
homologous
HL_5TBW_054
NA
HL_5T2A_0831/B/996:1008No text annotation
homologous
HL_8C3A_056
NA
HL_5T2A_0841/B/1036:1044No text annotation
homologous
HL_8C3A_057
NA
HL_5T2A_0851/B/1056:1063Pseudoknot geometry
homologous
HL_8C3A_058
NA
HL_5T2A_0861/B/1088:1096No text annotation
homologous
HL_8C3A_059
NA
HL_5T2A_0871/B/1108:1113GNRA
homologous
HL_8C3A_060
NA
HL_5T2A_0881/B/1150:1158Pseudoknot geometry
homologous
HL_8C3A_061
NA
HL_5T2A_0891/B/1214:1222No text annotation
homologous
HL_5TBW_061
NA
HL_5T2A_0901/B/1271:1278No text annotation
homologous
HL_5TBW_062
NA
HL_5T2A_0911/B/1294:1300No text annotation
homologous
HL_5TBW_063
NA
HL_5T2A_0921/B/1337:1342GNRA
homologous
HL_5TBW_064
NA
HL_5T2A_0931/B/1395:1401No text annotation
geometric
HL_7A0S_061
HL_48677.1
HL_5T2A_0951/B/1442:1457No text annotation
HL_5T2A_0961/C/138:147No text annotation
geometric
HL_7RQB_001
NA
HL_5T2A_0981/C/198:204No text annotation
homologous
HL_5TBW_075
NA
HL_5T2A_1181/D/33:46No text annotation
homologous
HL_8C3A_228
NA
HL_5T2A_1001/D/37:42No text annotation
homologous
HL_5TBW_185
NA
HL_5T2A_1011/D/87:92GNRA
homologous
HL_5TBW_186
NA
HL_5T2A_1021/E/5:10GNRA
geometric
HL_5TBW_030
NA
HL_5T2A_1031/E/53:61No text annotation
geometric
HL_5TBW_037
NA
HL_5T2A_1041/E/115:123tRNA D-loop
geometric
HL_6UFM_001
HL_04642.3
HL_5T2A_1061/F/30:33Mini UNCG
geometric
HL_4L8H_001
HL_90436.3
HL_5T2A_1071/F/38:41Mini UNCG
geometric
HL_6MSF_001
HL_90436.3
HL_5T2A_1081/G/7:17Pseudoknot geometry
geometric
HL_3IGI_005
HL_52651.2
HL_5T2A_1091/G/53:58GNRA
geometric
HL_4V9F_066
HL_34789.4
HL_5T2A_1101/G/96:101Ribsomal LSU H95
homologous
HL_8C3A_067
NA
HL_5T2A_1111/G/138:152No text annotation
homologous
HL_8C3A_068
NA
HL_5T2A_1121/H/9:17No text annotation
geometric
HL_5TBW_070
NA

Problematic loops

#loop idProblemSequence
HL_5T2A_003No text annotation
HL_5T2A_005No text annotation
HL_5T2A_014No text annotation
HL_5T2A_017No text annotation
HL_5T2A_021Pseudoknot geometry
HL_5T2A_025No text annotation
HL_5T2A_029No text annotation
HL_5T2A_115No text annotation
HL_5T2A_032No text annotation
HL_5T2A_033No text annotation
HL_5T2A_034No text annotation
HL_5T2A_036No text annotation
HL_5T2A_043No text annotation
HL_5T2A_051No text annotation
HL_5T2A_052No text annotation
HL_5T2A_055No text annotation
HL_5T2A_056No text annotation
HL_5T2A_061No text annotation
HL_5T2A_065No text annotation
HL_5T2A_066Mini UNCG
HL_5T2A_068No text annotation
HL_5T2A_071No text annotation
HL_5T2A_117No text annotation
HL_5T2A_094No text annotation
HL_5T2A_097No text annotation
HL_5T2A_099No text annotation
HL_5T2A_105No text annotation
HL_5T2A_113No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_5T2A_0011/2/24:26,
1/2/649:650		Single bulged C
homologous
IL_4V88_384
NA
IL_5T2A_0021/2/37:41,
1/2/514:519		Triple sheared related
homologous
IL_4V88_386
NA
IL_5T2A_0031/2/42:48,
1/2/474:476		No text annotation
homologous
IL_4V88_387
NA
IL_5T2A_0041/2/50:52,
1/2/471:472		Minor groove platform
homologous
IL_4V88_388
NA
IL_5T2A_0051/2/58:63,
1/2/85:87		No text annotation
geometric
IL_4V88_389
NA
IL_5T2A_2021/2/64:69,
1/2/80:84		No text annotation
homologous
IL_8P9A_379
IL_21667.2
IL_5T2A_0071/2/107:110,
1/2/346:349		Tandem non-canonical cWW pairs
geometric
IL_3WBM_002
IL_15225.2
IL_5T2A_0081/2/111:114,
1/2/344:345		Multiple bulged bases
homologous
IL_4V88_392
NA
IL_5T2A_0091/2/115:119,
1/2/340:343		No text annotation
geometric
IL_4LFB_008
IL_60988.2
IL_5T2A_0101/2/120:122,
1/2/337:339		Isolated non-canonical cWW pair
geometric
IL_4M4O_001
IL_01003.3
IL_5T2A_0111/2/148:154,
1/2/170:177		tWH-tWH-tHW-tHW
homologous
IL_4V88_394
NA
IL_5T2A_0121/2/192:195,
1/2/231:233		Isolated non-canonical cWW pair
geometric
IL_1YZ9_001
NA
IL_5T2A_0131/2/198:199,
1/2/226:228		Single bulged U
geometric
IL_6JDV_003
IL_97561.3
IL_5T2A_0141/2/239:240,
1/2/307:311		Multiple bulged bases
geometric
IL_4V9F_021
IL_71421.2
IL_5T2A_0151/2/355:360,
1/2/392:399		Kink-turn with non-sequential stacking
homologous
IL_4V88_402
NA
IL_5T2A_0161/2/362:367,
1/2/389:390		No text annotation
geometric
IL_5Y58_001
IL_37738.1
IL_5T2A_0171/2/371:373,
1/2/383:385		Isolated non-canonical cWW pair
geometric
IL_4LFB_010
IL_01003.3
IL_5T2A_0181/2/406:408,
1/2/419:424		No text annotation
homologous
IL_4V88_404
NA
IL_5T2A_0191/2/432:434,
1/2/449:451		Isolated cWH basepair
homologous
IL_4V88_405
NA
IL_5T2A_0201/2/482:484,
1/2/511:512		Single bulged U
geometric
IL_4LFB_014
IL_97561.3
IL_5T2A_0211/2/486:490,
1/2/508:509		C-loop
geometric
IL_5J7L_018
NA
IL_5T2A_0221/2/490:491,
1/2/506:508		Single bulged G
geometric
IL_5J7L_019
NA
IL_5T2A_2031/2/561:562,
1/2/579:585		Multiple bulged bases
geometric
IL_7OS0_002
IL_71421.2
IL_5T2A_2041/2/596:598,
1/2/638:641		No text annotation
geometric
IL_4V87_185
NA
IL_5T2A_0241/2/598:606,
1/2/636:638		No text annotation
IL_5T2A_2281/2/599:608,
1/2/635:637		No text annotation
IL_5T2A_0251/2/606:608,
1/2/635:636		Single bulged U
geometric
IL_7RQB_080
NA
IL_5T2A_0261/2/611:617,
1/2/624:632		Kink-turn related
homologous
IL_4V88_415
NA
IL_5T2A_0271/2/665:671,
1/2/1458:1459		No text annotation
homologous
IL_4V88_416
NA
IL_5T2A_0281/2/676:680,
1/2/1215:1219		tSH-tHW-tHS
homologous
IL_4V88_418
NA
IL_5T2A_0301/2/787:791,
1/2/832:834		No text annotation
IL_5T2A_0311/2/791:795,
1/2/831:832		Multiple bulged bases
geometric
IL_5TBW_119
NA
IL_5T2A_0321/2/847:848,
1/2/903:906		Major groove minor groove platform; mini C-loop
homologous
IL_4V88_423
NA
IL_5T2A_0331/2/852:860,
1/2/892:899		No text annotation
homologous
IL_4V88_425
NA
IL_5T2A_2061/2/921:924,
1/2/962:965		Tandem non-canonical cWW pairs
geometric
IL_6JDV_001
IL_71194.2
IL_5T2A_0351/2/929:932,
1/2/938:957		No text annotation
IL_5T2A_0361/2/1111:1113,
1/2/1208:1212		No text annotation
geometric
IL_5J7L_332
NA
IL_5T2A_2071/2/1114:1115,
1/2/1205:1207		Single bulged C
geometric
IL_1S03_002
IL_05642.2
IL_5T2A_2081/2/1117:1120,
1/2/1201:1203		Isolated non-canonical cWW pair
geometric
IL_2R8S_001
IL_01003.3
IL_5T2A_0391/2/1121:1125,
1/2/1197:1200		Tandem non-canonical cWW pairs
geometric
IL_4V88_431
NA
IL_5T2A_2291/2/1132:1136,
1/2/1170:1174		Triple non-canonical cWW pairs
geometric
IL_4LFB_065
IL_71154.3
IL_5T2A_2091/2/1138:1140,
1/2/1166:1168		Isolated non-canonical cWW pair
geometric
IL_3HHN_004
IL_01003.3
IL_5T2A_0421/2/1142:1146,
1/2/1157:1164		Kink-turn
homologous
IL_4V88_434
NA
IL_5T2A_0431/2/1232:1237,
1/2/1261:1263		Other IL
geometric
IL_4V88_435
NA
IL_5T2A_0441/2/1237:1241,
1/2/1257:1261		tSH-tHW-tHS
homologous
IL_4V88_436
NA
IL_5T2A_0451/2/1281:1283,
1/2/1449:1455		No text annotation
homologous
IL_4V88_437
NA
IL_5T2A_0471/2/1465:1472,
1/2/1483:1488		8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_4V88_440
NA
IL_5T2A_0481/2/1500:1501,
1/2/2046:2048		Single bulged A
homologous
IL_4V88_441
NA
IL_5T2A_0491/2/1503:1505,
1/2/2043:2044		Single bulged G
homologous
IL_4V88_442
NA
IL_5T2A_2101/2/1511:1514,
1/2/2033:2037		C-loop
homologous
IL_8P9A_431
IL_63596.12
IL_5T2A_2301/2/1564:1567,
1/2/1853:1857		Tandem non-canonical cWW pairs
geometric
IL_1JID_002
IL_15225.2
IL_5T2A_0511/2/1622:1625,
1/2/1842:1844		No text annotation
IL_5T2A_2121/2/1626:1630,
1/2/1839:1841		No text annotation
homologous
IL_8P9A_438
IL_82453.1
IL_5T2A_2131/2/1630:1632,
1/2/1833:1839		No text annotation
homologous
IL_8P9A_440
IL_34117.1
IL_5T2A_0531/2/1634:1635,
1/2/1829:1831		Single bulged A
homologous
IL_4V88_452
NA
IL_5T2A_0541/2/1644:1646,
1/2/1677:1679		Isolated non-canonical cWW pair
geometric
IL_5UNE_007
IL_01003.3
IL_5T2A_0551/2/1695:1702,
1/2/1777:1784		No text annotation
IL_5T2A_2311/2/1795:1797,
1/2/1806:1807		No text annotation
IL_5T2A_2321/2/1910:1914,
1/2/1924:1927		No text annotation
IL_5T2A_0571/2/2052:2054,
1/2/2167:2170		No text annotation
homologous
IL_4V88_463
NA
IL_5T2A_0581/2/2054:2057,
1/2/2163:2167		No text annotation
geometric
IL_4V88_464
NA
IL_5T2A_0591/2/2058:2060,
1/2/2160:2162		Isolated non-canonical cWW pair
geometric
IL_4V9F_017
IL_01003.3
IL_5T2A_0601/2/2060:2062,
1/2/2157:2160		Isolated non-canonical cWW pair
geometric
IL_5J7L_009
NA
IL_5T2A_0611/2/2069:2072,
1/2/2147:2150		Double sheared
homologous
IL_4V88_468
NA
IL_5T2A_0621/2/2072:2075,
1/2/2144:2147		Tandem non-canonical cWW pairs
geometric
IL_4EYA_010
IL_15225.2
IL_5T2A_0631/2/2077:2079,
1/2/2140:2142		Isolated non-canonical cWW pair
geometric
IL_4E59_001
IL_01003.3
IL_5T2A_0641/2/2079:2081,
1/2/2138:2140		Isolated non-canonical cWW pair
homologous
IL_4V88_470
NA
IL_5T2A_0651/2/2084:2087,
1/2/2132:2135		Double sheared
homologous
IL_8C3A_478
NA
IL_5T2A_0661/2/2091:2093,
1/2/2126:2128		Isolated non-canonical cWW pair
geometric
IL_4P3U_006
IL_71625.3
IL_5T2A_0671/2/2093:2097,
1/2/2122:2126		Triple sheared
geometric
IL_7RQB_075
NA
IL_5T2A_0681/2/2097:2099,
1/2/2120:2122		No text annotation
geometric
IL_3ICQ_003
NA
IL_5T2A_2331/A/6:7,
1/C/253:255		Single bulged U
geometric
IL_7VTI_004
IL_97561.3
IL_5T2A_2151/A/25:26,
1/A/54:56		No text annotation
homologous
IL_8C3A_004
NA
IL_5T2A_0691/A/29:36,
1/A/43:51		tSH-tHW-tHH-tHS
geometric
IL_5TBW_005
NA
IL_5T2A_0701/A/80:88,
1/A/96:102		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_006
NA
IL_5T2A_0711/A/119:122,
1/A/148:149		Major groove platform; stack outside cWW
geometric
IL_5J7L_306
NA
IL_5T2A_2171/A/119:123,
1/A/143:149		Kink-turn with embedded cWW pair
geometric
IL_4V9F_108
IL_65996.1
IL_5T2A_0721/A/122:123,
1/A/143:148		No text annotation
homologous
IL_5TBW_007
NA
IL_5T2A_0731/A/124:125,
1/A/140:142		No text annotation
IL_5T2A_2341/A/369:371,
1/C/122:125		No text annotation
geometric
IL_8P9A_285
IL_42997.5
IL_5T2A_2191/A/377:380,
1/C/114:116		Decoding loop related
geometric
IL_2O3X_003
IL_53541.1
IL_5T2A_0741/A/417:420,
1/A/431:444		No text annotation
homologous
IL_5TBW_014
NA
IL_5T2A_2201/A/445:450,
1/C/104:109		No text annotation
geometric
IL_4LFB_055
IL_57885.2
IL_5T2A_2351/A/468:471,
1/A/662:665		Tandem non-canonical cWW pairs
geometric
IL_1L9A_005
NA
IL_5T2A_0761/A/476:478,
1/A/656:657		Major groove platform
geometric
IL_4V9F_082
IL_48076.8
IL_5T2A_0781/A/487:489,
1/A/645:646		Single bulged G
geometric
IL_4V88_442
NA
IL_5T2A_0791/A/497:498,
1/A/562:565		Multiple bulged bases
geometric
IL_5WLH_001
IL_71421.2
IL_5T2A_0801/A/501:506,
1/A/549:559		No text annotation
IL_5T2A_0811/A/508:509,
1/A/545:547		Single bulged G
geometric
IL_4WF9_023
IL_28408.2
IL_5T2A_2211/A/581:597,
1/A/608:625		No text annotation
IL_5T2A_0831/A/701:703,
1/A/842:844		Isolated non-canonical cWW pair
homologous
IL_5TBW_021
NA
IL_5T2A_2361/A/717:719,
1/A/732:733		Single stack bend
geometric
IL_4LFB_041
IL_15011.2
IL_5T2A_0841/A/776:780,
1/A/801:806		Triple sheared related
geometric
IL_4V9F_018
IL_67427.1
IL_5T2A_0851/A/781:783,
1/A/798:800		Isolated non-canonical cWW pair
geometric
IL_4V88_470
NA
IL_5T2A_0861/A/812:816,
1/A/828:833		Other IL
geometric
IL_4WF9_084
NA
IL_5T2A_0871/A/854:856,
1/A/989:991		Isolated non-canonical cWW pair
homologous
IL_5TBW_027
NA
IL_5T2A_0881/A/856:860,
1/A/982:989		tHW-tHW cross-strand stack
geometric
IL_5TBW_028
NA
IL_5T2A_0891/A/879:880,
1/A/946:948		Single bulged A
homologous
IL_8C3A_031
NA
IL_5T2A_0901/A/884:885,
1/A/910:912		Single bulged G
homologous
IL_8C3A_032
NA
IL_5T2A_0911/A/885:889,
1/A/906:910		Triple sheared
geometric
IL_4V9F_027
IL_15190.2
IL_5T2A_0921/A/891:893,
1/A/902:904		Isolated non-canonical cWW pair
geometric
IL_4LFB_061
NA
IL_5T2A_0931/A/920:923,
1/A/939:941		Major groove platform with extra cWW
homologous
IL_5TBW_031
NA
IL_5T2A_0941/A/924:926,
1/A/937:938		Single bulged U
homologous
IL_8C3A_035
NA
IL_5T2A_0951/A/958:960,
1/A/970:974		Multiple bulged bases
geometric
IL_5J7L_265
NA
IL_5T2A_0961/A/995:996,
1/A/1465:1467		Single bulged G
geometric
IL_4WF9_023
IL_28408.2
IL_5T2A_0971/A/1005:1007,
1/A/1016:1018		Isolated non-canonical cWW pair
homologous
IL_5TBW_034
NA
IL_5T2A_0981/A/1020:1021,
1/A/1168:1170		No text annotation
homologous
IL_8C3A_038
NA
IL_5T2A_0991/A/1027:1033,
1/A/1158:1162		No text annotation
IL_5T2A_1001/A/1034:1036,
1/A/1156:1157		Single bulged G
homologous
IL_8C3A_040
NA
IL_5T2A_1011/A/1043:1048,
1/A/1103:1108		5x5 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_7A0S_027
NA
IL_5T2A_1021/A/1048:1049,
1/A/1101:1103		Minor groove platform
homologous
IL_8C3A_042
NA
IL_5T2A_1031/A/1050:1055,
1/A/1097:1100		C-loop
homologous
IL_5TBW_040
NA
IL_5T2A_1041/A/1057:1060,
1/A/1092:1095		Tandem non-canonical cWW pairs
homologous
IL_5TBW_041
NA
IL_5T2A_1051/A/1060:1062,
1/A/1090:1092		Isolated non-canonical cWW pair
geometric
IL_5TBW_127
NA
IL_5T2A_1061/A/1121:1123,
1/A/1142:1143		Single bulged U
geometric
IL_3TZR_002
IL_97561.3
IL_5T2A_2371/A/1126:1129,
1/A/1137:1139		Isolated cWH basepair
geometric
IL_4WF9_121
IL_10892.2
IL_5T2A_1081/A/1177:1179,
1/A/1193:1195		Isolated non-canonical cWW pair
homologous
IL_5TBW_046
NA
IL_5T2A_1101/A/1224:1228,
1/A/1398:1402		UAA/GAN
homologous
IL_5TBW_048
NA
IL_5T2A_1111/A/1230:1237,
1/A/1387:1396		SSU/LSU pseudoknot
homologous
IL_8C3A_052
NA
IL_5T2A_1121/A/1237:1240,
1/A/1386:1387		Multiple bulged bases
geometric
IL_7V9E_001
NA
IL_5T2A_1131/A/1240:1243,
1/A/1384:1386		Isolated cWH basepair
geometric
IL_4E5C_001
IL_10892.2
IL_5T2A_1141/A/1246:1255,
1/A/1376:1381		No text annotation
geometric
IL_5TBW_051
NA
IL_5T2A_1151/A/1255:1267,
1/A/1361:1376		No text annotation
geometric
IL_5TBW_052
NA
IL_5T2A_1161/A/1269:1271,
1/A/1358:1359		Single bulged U
homologous
IL_5TBW_053
NA
IL_5T2A_1171/A/1412:1414,
1/A/1452:1453		No text annotation
IL_5T2A_1181/A/1418:1419,
1/A/1442:1448		Multiple bulged bases
geometric
IL_4V88_392
NA
IL_5T2A_1191/A/1468:1470,
1/A/1520:1523		Isolated cWS basepair
homologous
IL_5TBW_057
NA
IL_5T2A_1201/A/1477:1479,
1/A/1511:1513		Isolated near basepair
geometric
IL_3NJ7_003
IL_42997.5
IL_5T2A_1211/A/1479:1486,
1/A/1507:1511		Kink-turn
geometric
IL_7RQB_047
NA
IL_5T2A_1221/A/1486:1487,
1/A/1505:1507		Single bulged A
geometric
IL_5TBW_024
NA
IL_5T2A_1231/A/1489:1492,
1/A/1501:1503		Isolated non-canonical cWW pair
homologous
IL_8C3A_064
NA
IL_5T2A_1241/A/1536:1542,
1/B/537:542		7x6 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_061
NA
IL_5T2A_1251/A/1607:1612,
1/A/1620:1623		No text annotation
homologous
IL_8C3A_066
NA
IL_5T2A_1261/A/1640:1644,
1/A/1737:1742		UAA/GAN
homologous
IL_5TBW_063
NA
IL_5T2A_1271/A/1645:1647,
1/A/1734:1736		Isolated non-canonical cWW pair
geometric
IL_5UNE_004
IL_01003.3
IL_5T2A_1281/A/1674:1678,
1/A/1726:1730		Double sheared with non-canonical cWW
geometric
IL_7A0S_087
IL_87767.2
IL_5T2A_2381/A/1749:1750,
1/A/1762:1767		No text annotation
IL_5T2A_2391/A/1776:1779,
1/B/4:7		Tandem non-canonical cWW pairs
geometric
IL_8P9A_419
IL_15225.2
IL_5T2A_2401/B/65:70,
1/B/530:532		No text annotation
IL_5T2A_1321/B/73:75,
1/B/526:527		No text annotation
IL_5T2A_1331/B/78:80,
1/B/521:523		No text annotation
homologous
IL_8C3A_081
NA
IL_5T2A_1341/B/81:84,
1/B/519:520		Major groove platform; stack outside cWW
geometric
IL_5TBW_076
NA
IL_5T2A_2231/B/81:89,
1/B/516:520		No text annotation
homologous
IL_8C3A_484
NA
IL_5T2A_1351/B/84:89,
1/B/516:519		No text annotation
homologous
IL_8C3A_083
NA
IL_5T2A_1361/B/101:106,
1/B/111:117		No text annotation
homologous
IL_8C3A_084
NA
IL_5T2A_1371/B/123:125,
1/B/291:293		Isolated non-canonical cWW pair
homologous
IL_8C3A_085
NA
IL_5T2A_1381/B/130:132,
1/B/282:286		No text annotation
IL_5T2A_1391/B/311:312,
1/B/506:508		Single bulged A
homologous
IL_8C3A_087
NA
IL_5T2A_1401/B/339:344,
1/B/356:363		Kink-turn related
homologous
IL_5TBW_083
NA
IL_5T2A_1421/B/379:382,
1/B/428:429		No text annotation
homologous
IL_8C3A_089
NA
IL_5T2A_1431/B/383:384,
1/B/424:427		Multiple bulged bases
homologous
IL_8C3A_090
NA
IL_5T2A_1441/B/387:393,
1/B/418:421		No text annotation
IL_5T2A_1451/B/394:399,
1/B/412:417		No text annotation
geometric
IL_4V9F_057
IL_34822.1
IL_5T2A_1461/B/459:460,
1/B/490:493		No text annotation
homologous
IL_8C3A_094
NA
IL_5T2A_1471/B/460:471,
1/B/487:490		No text annotation
homologous
IL_5TBW_090
NA
IL_5T2A_1481/B/574:577,
1/B/1360:1362		Major groove platform with extra pair
homologous
IL_5TBW_091
NA
IL_5T2A_1491/B/579:581,
1/B/1355:1358		Major groove platform with intercalation
homologous
IL_5TBW_092
NA
IL_5T2A_1501/B/592:594,
1/B/1185:1186		Single bulged U
homologous
IL_8C3A_098
NA
IL_5T2A_1511/B/595:596,
1/B/1181:1184		Minor groove platform
homologous
IL_5TBW_094
NA
IL_5T2A_1521/B/606:608,
1/B/967:970		No text annotation
homologous
IL_8C3A_100
NA
IL_5T2A_1531/B/620:622,
1/B/691:693		Isolated non-canonical cWW pair
geometric
IL_5TBW_008
NA
IL_5T2A_1541/B/703:709,
1/B/945:949		No text annotation
homologous
IL_8C3A_106
NA
IL_5T2A_1561/B/1029:1031,
1/B/1049:1053		Isolated tHS basepair with bulges
homologous
IL_5TBW_099
NA
IL_5T2A_1571/B/1077:1079,
1/B/1104:1105		Single bulged A
geometric
IL_5WWT_001
IL_14190.2
IL_5T2A_1581/B/1080:1084,
1/B/1100:1103		No text annotation
IL_5T2A_1591/B/1132:1134,
1/B/1162:1163		Single stack bend
geometric
IL_7A0S_054
IL_15011.2
IL_5T2A_1601/B/1134:1147,
1/B/1161:1162		No text annotation
IL_5T2A_1611/B/1197:1198,
1/B/1239:1241		Major groove platform
homologous
IL_5TBW_102
NA
IL_5T2A_2241/B/1197:1200,
1/B/1237:1241		No text annotation
homologous
IL_8C3A_111
NA
IL_5T2A_1621/B/1198:1200,
1/B/1237:1239		Isolated non-canonical cWW pair
geometric
IL_5TBW_103
NA
IL_5T2A_1631/B/1200:1202,
1/B/1236:1237		Major groove platform
homologous
IL_5TBW_104
NA
IL_5T2A_1641/B/1202:1204,
1/B/1232:1236		Major groove minor groove platform with extra cWW
geometric
IL_5TBW_105
NA
IL_5T2A_1651/B/1209:1213,
1/B/1223:1227		No text annotation
homologous
IL_8C3A_114
NA
IL_5T2A_1661/B/1250:1251,
1/B/1323:1325		Major groove platform
homologous
IL_5TBW_107
NA
IL_5T2A_1671/B/1253:1255,
1/B/1317:1321		Isolated non-canonical cWW with bulges
geometric
IL_5TBW_108
NA
IL_5T2A_1681/B/1255:1256,
1/B/1314:1317		No text annotation
homologous
IL_8C3A_117
NA
IL_5T2A_1691/B/1265:1266,
1/B/1283:1286		Major groove platform with intercalation
homologous
IL_5TBW_111
NA
IL_5T2A_1701/B/1269:1271,
1/B/1278:1280		Isolated non-canonical cWW pair
geometric
IL_6OL3_002
IL_01003.3
IL_5T2A_1711/B/1292:1294,
1/B/1300:1302		Isolated non-canonical cWW pair
geometric
IL_5TBW_112
NA
IL_5T2A_1721/B/1334:1335,
1/B/1344:1346		Single bulged A
homologous
IL_8C3A_122
NA
IL_5T2A_1731/B/1410:1411,
1/B/1426:1428		Single stack bend
geometric
IL_4WF9_007
IL_15011.2
IL_5T2A_1741/C/155:156,
1/C/184:186		No text annotation
IL_5T2A_1751/C/212:217,
1/C/228:233		No text annotation
IL_5T2A_1761/D/8:10,
1/D/111:113		Isolated non-canonical cWW pair
geometric
IL_1Z7F_002
NA
IL_5T2A_1771/D/16:17,
1/D/63:65		Single bulged A
homologous
IL_5TBW_372
NA
IL_5T2A_1781/D/22:28,
1/D/53:58		Minor groove platform related
homologous
IL_5TBW_373
NA
IL_5T2A_1791/D/29:30,
1/D/49:52		Major groove minor groove platform; mini C-loop
homologous
IL_5J7L_357
NA
IL_5T2A_1801/D/33:37,
1/D/42:46		Symmetric double minor groove platform
geometric
IL_5TBW_376
NA
IL_5T2A_1811/D/72:79,
1/D/99:105		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_377
NA
IL_5T2A_1821/D/83:86,
1/D/93:95		Isolated non-canonical cWW pair
homologous
IL_5TBW_378
NA
IL_5T2A_1831/E/20:23,
1/E/208:209		Minor groove platform
geometric
IL_4LFB_045
IL_24264.1
IL_5T2A_2261/E/28:36,
1/E/187:203		No text annotation
IL_5T2A_1841/E/37:41,
1/E/182:186		UAA/GAN variation
geometric
IL_2R8S_006
IL_45790.2
IL_5T2A_1851/E/43:44,
1/E/178:180		Single bulged U
geometric
IL_2R8S_004
IL_97561.3
IL_5T2A_2411/E/72:74,
1/E/141:143		Isolated non-canonical cWW pair
geometric
IL_4JGN_002
IL_01003.3
IL_5T2A_1881/F/10:11,
1/F/46:70		No text annotation
IL_5T2A_1891/G/30:31,
1/G/173:175		Single bulged A
geometric
IL_2VPL_002
IL_14190.2
IL_5T2A_1901/G/31:35,
1/G/167:173		No text annotation
IL_5T2A_1911/G/46:53,
1/G/58:64		8x7 Sarcin-Ricin; G-bulge
homologous
IL_8C3A_125
NA
IL_5T2A_1921/G/75:79,
1/G/119:122		C-loop
geometric
IL_7RQB_104
NA
IL_5T2A_1931/G/79:81,
1/G/117:119		Isolated non-canonical cWW pair
geometric
IL_6IA2_005
IL_01003.3
IL_5T2A_1941/G/82:87,
1/G/112:116		UAA/GAN related
homologous
IL_8C3A_127
NA
IL_5T2A_1951/G/91:92,
1/G/105:108		Multiple bulged bases
homologous
IL_5TBW_119
NA
IL_5T2A_2271/G/131:136,
1/G/154:159		No text annotation
IL_5T2A_1981/H/32:34,
1/H/98:104		Isolated non-canonical cWW with bulges
geometric
IL_4PKD_001
IL_68118.3
IL_5T2A_1991/H/35:41,
1/H/92:97		No text annotation
IL_5T2A_2011/H/67:70,
1/H/85:88		Double sheared
geometric
IL_4V9F_100
IL_58355.2

Problematic loops

#loop idProblemSequence
IL_5T2A_006No text annotation
IL_5T2A_023Other IL
IL_5T2A_205No text annotation
IL_5T2A_029Isolated non-canonical cWW pair
IL_5T2A_034No text annotation
IL_5T2A_037Isolated non-canonical cWW pair
IL_5T2A_038Tandem non-canonical cWW pairs
IL_5T2A_040No text annotation
IL_5T2A_041Tandem non-canonical cWW pairs
IL_5T2A_046No text annotation
IL_5T2A_050C-loop with extra cWW pair
IL_5T2A_211Tandem non-canonical cWW pairs
IL_5T2A_052No text annotation
IL_5T2A_056No text annotation
IL_5T2A_214Tandem non-canonical cWW pairs
IL_5T2A_216No text annotation
IL_5T2A_218Tandem non-canonical cWW pairs
IL_5T2A_075No text annotation
IL_5T2A_077No text annotation
IL_5T2A_082No text annotation
IL_5T2A_107Tandem non-canonical cWW pairs
IL_5T2A_109No text annotation
IL_5T2A_129No text annotation
IL_5T2A_222Triple non-canonical cWW pairs
IL_5T2A_130No text annotation
IL_5T2A_131No text annotation
IL_5T2A_141Isolated cWS basepair
IL_5T2A_155No text annotation
IL_5T2A_225No text annotation
IL_5T2A_186No text annotation
IL_5T2A_187No text annotation
IL_5T2A_196No text annotation
IL_5T2A_197Stack outside cWW
IL_5T2A_200No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_5T2A_0011/2/41:42,
1/2/476:482,
1/2/512:514		No text annotation
geometric
J3_8C3A_082
NA
J3_5T2A_0221/2/41:48,
1/2/474:482,
1/2/512:514		No text annotation
homologous
J3_8C3A_083
NA
J3_5T2A_0231/2/247:263,
1/2/274:291,
1/2/298:300		No text annotation
J3_5T2A_0021/2/682:685,
1/2/1106:1111,
1/2/1212:1213		No text annotation
J3_5T2A_0031/2/861:864,
1/2/874:876,
1/2/885:891		No text annotation
homologous
J3_4V88_032
NA
J3_5T2A_0041/2/917:920,
1/2/966:975,
1/2/1099:1102		No text annotation
J3_5T2A_0051/2/1130:1131,
1/2/1175:1183,
1/2/1190:1192		No text annotation
geometric
J3_1G1X_002
NA
J3_5T2A_0071/2/1515:1520,
1/2/1995:2003,
1/2/2025:2032		No text annotation
J3_5T2A_0411/2/1529:1541,
1/2/1552:1563,
1/2/1858:1869		No text annotation
J3_5T2A_0081/2/1530:1541,
1/2/1552:1563,
1/2/1858:1868		No text annotation
J3_5T2A_0421/2/1567:1590,
1/2/1603:1621,
1/2/1845:1853		No text annotation
J3_5T2A_0431/2/1637:1642,
1/2/1681:1686,
1/2/1822:1827		No text annotation
homologous
J3_8P9A_080
J3_17077.1
J3_5T2A_0271/2/1647:1648,
1/2/1657:1662,
1/2/1671:1676		No text annotation
J3_5T2A_0111/2/1690:1692,
1/2/1787:1794,
1/2/1808:1818		No text annotation
J3_5T2A_0281/A/194:204,
1/A/212:221,
1/A/232:239		No text annotation
J3_5T2A_0291/A/380:396,
1/A/403:410,
1/C/110:114		No text annotation
J3_5T2A_0301/A/410:417,
1/A/444:445,
1/C/109:110		No text annotation
geometric
J3_5J7L_036
NA
J3_5T2A_0311/A/410:420,
1/A/431:445,
1/C/109:110		No text annotation
homologous
J3_8P9A_047
J3_17917.1
J3_5T2A_0441/A/492:494,
1/A/568:580,
1/A/626:642		No text annotation
J3_5T2A_0331/A/865:871,
1/A/956:958,
1/A/974:977		No text annotation
homologous
J3_8C3A_003
NA
J3_5T2A_0131/A/880:882,
1/A/914:918,
1/A/943:946		No text annotation
homologous
J3_8C3A_004
NA
J3_5T2A_0341/A/1036:1038,
1/A/1113:1119,
1/A/1145:1156		No text annotation
J3_5T2A_0141/A/1586:1592,
1/B/39:41,
1/B/53:56		No text annotation
homologous
J3_8C3A_006
NA
J3_5T2A_0151/A/1595:1598,
1/B/19:25,
1/B/34:36		No text annotation
homologous
J3_5TBW_009
NA
J3_5T2A_0351/A/1599:1607,
1/A/1623:1634,
1/B/15:18		No text annotation
J3_5T2A_0451/A/1633:1640,
1/A/1742:1748,
1/A/1768:1770		No text annotation
J3_5T2A_0361/A/1647:1649,
1/A/1660:1674,
1/A/1730:1734		No text annotation
J3_5T2A_0161/B/614:618,
1/B/695:699,
1/B/953:961		No text annotation
J3_5T2A_0371/B/1014:1016,
1/B/1118:1128,
1/B/1167:1172		No text annotation
J3_5T2A_0171/B/1027:1029,
1/B/1053:1055,
1/B/1064:1069		No text annotation
homologous
J3_8C3A_010
NA
J3_5T2A_0181/B/1260:1263,
1/B/1288:1290,
1/B/1304:1310		No text annotation
homologous
J3_5TBW_014
NA
J3_5T2A_0461/C/135:136,
1/C/149:155,
1/C/186:190		No text annotation
homologous
J3_8P9A_067
J3_01004.1
J3_5T2A_0391/D/10:15,
1/D/66:67,
1/D/110:111		No text annotation
homologous
J3_8P9A_066
J3_26985.1
J3_5T2A_0401/F/13:26,
1/F/37:38,
1/F/41:44		No text annotation
J3_5T2A_0471/H/5:6,
1/H/20:25,
1/H/119:123		No text annotation
J4_5T2A_0011/2/97:105,
1/2/351:353,
1/2/401:404,
1/2/426:427		No text annotation
homologous
J4_8P9A_021
J4_15241.2
J4_5T2A_0021/A/1543:1549,
1/A/1582:1583,
1/B/59:62,
1/B/535:536		No text annotation
homologous
J4_8C3A_003
NA
J4_5T2A_0101/A/1599:1603,
1/A/1627:1632,
1/A/1771:1772,
1/B/11:18		No text annotation
homologous
J4_8P9A_015
J4_47264.1
J4_5T2A_0031/A/1636:1640,
1/A/1742:1748,
1/A/1768:1773,
1/B/10:13		No text annotation
J4_5T2A_0041/B/89:97,
1/B/121:122,
1/B/294:305,
1/B/514:516		No text annotation
J4_5T2A_0051/B/313:317,
1/B/329:333,
1/B/369:373,
1/B/500:505		No text annotation
homologous
J4_8P9A_017
J4_78485.1
J4_5T2A_0061/B/375:377,
1/B/431:432,
1/B/450:459,
1/B/493:498		No text annotation
homologous
J4_8C3A_007
NA
J4_5T2A_0071/B/1017:1021,
1/B/1075:1077,
1/B/1105:1106,
1/B/1115:1117		No text annotation
J4_5T2A_0081/B/1017:1021,
1/B/1075:1079,
1/B/1104:1106,
1/B/1115:1117		No text annotation
homologous
J4_8P9A_019
J4_59590.1
J4_5T2A_0091/G/35:40,
1/G/70:71,
1/G/126:128,
1/G/162:167		No text annotation
J5_5T2A_0011/2/54:57,
1/2/88:95,
1/2/429:431,
1/2/452:454,
1/2/465:469		No text annotation
homologous
J5_8C3A_020
NA
J5_5T2A_0061/A/18:20,
1/C/126:133,
1/C/192:197,
1/C/205:206,
1/C/239:241		No text annotation
homologous
J5_8P9A_010
J5_27223.1
J5_5T2A_0031/A/690:695,
1/A/850:853,
1/A/992:995,
1/A/1467:1468,
1/A/1523:1529		No text annotation
homologous
J5_8P9A_011
J5_08384.1
J5_5T2A_0071/B/582:589,
1/B/1189:1197,
1/B/1241:1250,
1/B/1325:1331,
1/B/1349:1354		No text annotation
J5_5T2A_0051/B/599:602,
1/B/974:978,
1/B/988:991,
1/B/1013:1014,
1/B/1172:1178		No text annotation
J6_5T2A_0051/2/123:130,
1/2/142:147,
1/2/178:189,
1/2/236:238,
1/2/312:317,
1/2/332:336		No text annotation
J6_5T2A_0021/A/20:25,
1/A/56:66,
1/A/73:77,
1/A/105:110,
1/A/359:369,
1/C/125:126		No text annotation
J6_5T2A_0031/A/707:710,
1/A/740:744,
1/A/751:754,
1/A/768:772,
1/A/810:811,
1/A/834:838		No text annotation
J6_5T2A_0041/B/599:602,
1/B/974:978,
1/B/988:991,
1/B/1013:1016,
1/B/1118:1128,
1/B/1167:1178		No text annotation
J7_5T2A_0011/A/1000:1005,
1/A/1018:1019,
1/A/1171:1174,
1/A/1198:1203,
1/A/1214:1218,
1/A/1408:1409,
1/A/1456:1461		No text annotation

Problematic loops

#loop idProblemSequence
J3_5T2A_024No text annotation
J3_5T2A_006No text annotation
J3_5T2A_025No text annotation
J3_5T2A_026No text annotation
J3_5T2A_009No text annotation
J3_5T2A_010No text annotation
J3_5T2A_032No text annotation
J3_5T2A_012No text annotation
J3_5T2A_019No text annotation
J3_5T2A_038No text annotation
J3_5T2A_020No text annotation
J3_5T2A_021No text annotation
J5_5T2A_002No text annotation
J5_5T2A_004No text annotation
J6_5T2A_001No text annotation

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