HL_5T2A_004

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAAACG

Length

7 nucleotides

Bulged bases

5T2A|1|2|C|164

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T2A_004 not in the Motif Atlas

Geometric match to HL_5Y7M_002

Geometric discrepancy: 0.1318

The information below is about HL_5Y7M_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

5T2A|1|2|C|159
5T2A|1|2|G|160
5T2A|1|2|A|161
5T2A|1|2|A|162
5T2A|1|2|A|163
5T2A|1|2|C|164
5T2A|1|2|G|165

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 3

eS6

Chain AT

eS24