HL_5T2A_012

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

5T2A|1|2|A|459

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T2A_012 not in the Motif Atlas

Homologous match to HL_4V88_196

Geometric discrepancy: 0.1851

The information below is about HL_4V88_196

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

5T2A|1|2|C|457
5T2A|1|2|U|458
5T2A|1|2|A|459
5T2A|1|2|C|460
5T2A|1|2|G|461
5T2A|1|2|G|462

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 3

eS6

Chain W

eL24