HL_5T2A_017

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCAUGUCGG

Length

9 nucleotides

Bulged bases

5T2A|1|2|G|726, 5T2A|1|2|U|727, 5T2A|1|2|C|728

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T2A_017 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.3034

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

5T2A|1|2|C|722
5T2A|1|2|C|723
5T2A|1|2|A|724
5T2A|1|2|U|725
5T2A|1|2|G|726
5T2A|1|2|U|727
5T2A|1|2|C|728
5T2A|1|2|G|729
5T2A|1|2|G|730

Current chains

Chain 2

18S rRNA

Nearby chains

Chain AC

uS2

Chain AL

eS17

Chain AR

eS21