HL_5T2A_018

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGACUAAAG

Length

9 nucleotides

Bulged bases

5T2A|1|2|G|866, 5T2A|1|2|C|868

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T2A_018 not in the Motif Atlas

Homologous match to HL_4V88_203

Geometric discrepancy: 0.2293

The information below is about HL_4V88_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

5T2A|1|2|U|865
5T2A|1|2|G|866
5T2A|1|2|A|867
5T2A|1|2|C|868
5T2A|1|2|U|869
5T2A|1|2|A|870
5T2A|1|2|A|871
5T2A|1|2|A|872
5T2A|1|2|G|873

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 1

eS4

Chain 6

uS4

Chain AT

eS24