HL_5T2A_021

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAGCACGGCCUC

Length

12 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T2A_021 not in the Motif Atlas

Geometric match to HL_8C3A_009

Geometric discrepancy: 0.367

The information below is about HL_8C3A_009

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_15076.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

5T2A|1|2|G|975
5T2A|1|2|A|976
5T2A|1|2|G|977
5T2A|1|2|C|978
5T2A|1|2|A|1092
5T2A|1|2|C|1093
5T2A|1|2|G|1094
5T2A|1|2|G|1095
5T2A|1|2|C|1096
5T2A|1|2|C|1097
5T2A|1|2|U|1098
5T2A|1|2|C|1099

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 4

eS7

Chain AG

uS15

Chain R

eL19