HL_5T2A_025

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGCACGGG

Length

8 nucleotides

Bulged bases

5T2A|1|2|C|1400, 5T2A|1|2|G|1402

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T2A_025 not in the Motif Atlas

Geometric match to HL_4WF9_011

Geometric discrepancy: 0.2953

The information below is about HL_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

5T2A|1|2|C|1382
5T2A|1|2|G|1383
5T2A|1|2|C|1398
5T2A|1|2|A|1399
5T2A|1|2|C|1400
5T2A|1|2|G|1401
5T2A|1|2|G|1402
5T2A|1|2|G|1403

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 0

eS1

Chain AW

eS27