HL_5T2A_042

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AAACCCGUU

Length

9 nucleotides

Bulged bases

5T2A|1|A|A|205, 5T2A|1|A|U|211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T2A_042 not in the Motif Atlas

Geometric match to HL_4OOG_001

Geometric discrepancy: 0.2461

The information below is about HL_4OOG_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_12626.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

5T2A|1|A|A|204
5T2A|1|A|A|205
5T2A|1|A|A|206
5T2A|1|A|C|207
5T2A|1|A|C|208
5T2A|1|A|C|209
5T2A|1|A|G|210
5T2A|1|A|U|211
5T2A|1|A|U|212

Current chains

Chain A

LSU-alpha

Nearby chains

Chain a

eL28

Chain g

eL32

Chain p

uL4