HL_5T2A_043
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAACCCUUCAUG
- Length
- 12 nucleotides
- Bulged bases
- 5T2A|1|A|A|223
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5T2A_043 not in the Motif Atlas
- Geometric match to HL_3SUX_001
- Geometric discrepancy: 0.3261
- The information below is about HL_3SUX_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_14856.1
- Basepair signature
- cWW-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5T2A|1|A|C|221
5T2A|1|A|A|222
5T2A|1|A|A|223
5T2A|1|A|C|224
5T2A|1|A|C|225
5T2A|1|A|C|226
5T2A|1|A|U|227
5T2A|1|A|U|228
5T2A|1|A|C|229
5T2A|1|A|A|230
5T2A|1|A|U|231
5T2A|1|A|G|232
Current chains
- Chain A
- LSU-alpha
Nearby chains
- Chain G
- Large subunit ribosomal RNA; LSU rRNA
- Chain P
- uL22
- Chain g
- eL32
Coloring options: