HL_5T2A_052

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAUAUGGUUGCCAGUAC

Length

17 nucleotides

Bulged bases

5T2A|1|A|G|722, 5T2A|1|A|A|729

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5T2A|1|A|G|717
5T2A|1|A|A|718
5T2A|1|A|U|719
5T2A|1|A|A|720
5T2A|1|A|U|721
5T2A|1|A|G|722
5T2A|1|A|G|723
5T2A|1|A|U|724
5T2A|1|A|U|725
5T2A|1|A|G|726
5T2A|1|A|C|727
5T2A|1|A|C|728
5T2A|1|A|A|729
5T2A|1|A|G|730
5T2A|1|A|U|731
5T2A|1|A|A|732
5T2A|1|A|C|733

Current chains

Chain A

LSU-alpha

Nearby chains

Chain C

5.8S ribosomal RNA; 5.8S rRNA

Chain L

eL13

Chain O

eL15

Chain X

uL24

Chain p

uL4