HL_5T2A_054

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAAUAUG

Length

7 nucleotides

Bulged bases

5T2A|1|A|A|762, 5T2A|1|A|U|763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T2A_054 not in the Motif Atlas

Geometric match to HL_4YAZ_004

Geometric discrepancy: 0.2566

The information below is about HL_4YAZ_004

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

5T2A|1|A|C|758
5T2A|1|A|A|759
5T2A|1|A|A|760
5T2A|1|A|U|761
5T2A|1|A|A|762
5T2A|1|A|U|763
5T2A|1|A|G|764

Current chains

Chain A

LSU-alpha

Nearby chains

Chain B

Large subunit ribosomal RNA; LSU rRNA

Chain L

eL13

Chain Z

uL15

Chain b

eL29