HL_5T2A_062

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCAACUG

Length

7 nucleotides

Bulged bases

5T2A|1|A|U|1135

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T2A_062 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.2028

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

5T2A|1|A|C|1130
5T2A|1|A|C|1131
5T2A|1|A|A|1132
5T2A|1|A|A|1133
5T2A|1|A|C|1134
5T2A|1|A|U|1135
5T2A|1|A|G|1136

Current chains

Chain A

LSU-alpha

Nearby chains

Chain b

eL29

Chain s

uL18