HL_5T2A_066
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGGAAACAAACGGAGAAAG
- Length
- 19 nucleotides
- Bulged bases
- 5T2A|1|A|G|1420, 5T2A|1|A|A|1440
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5T2A_066 not in the Motif Atlas
- Geometric match to HL_5U30_001
- Geometric discrepancy: 0.1291
- The information below is about HL_5U30_001
- Detailed Annotation
- Mini UNCG
- Broad Annotation
- No text annotation
- Motif group
- HL_90436.3
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 46
Unit IDs
5T2A|1|A|C|1419
5T2A|1|A|G|1420
5T2A|1|A|G|1421
5T2A|1|A|A|1422
5T2A|1|A|A|1423
5T2A|1|A|A|1424
5T2A|1|A|C|1425
5T2A|1|A|A|1426
5T2A|1|A|A|1427
5T2A|1|A|A|1428
5T2A|1|A|C|1429
5T2A|1|A|G|1435
5T2A|1|A|G|1436
5T2A|1|A|A|1437
5T2A|1|A|G|1438
5T2A|1|A|A|1439
5T2A|1|A|A|1440
5T2A|1|A|A|1441
5T2A|1|A|G|1442
Current chains
- Chain A
- LSU-alpha
Nearby chains
- Chain I
- eL18
- Chain a
- eL28
- Chain g
- eL32
- Chain p
- uL4
- Chain u
- uL30
Coloring options: