HL_5T2A_069
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGCACUC
- Length
- 7 nucleotides
- Bulged bases
- 5T2A|1|A|G|1614, 5T2A|1|A|U|1618
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5T2A_069 not in the Motif Atlas
- Homologous match to HL_5TBW_032
- Geometric discrepancy: 0.2282
- The information below is about HL_5TBW_032
- Detailed Annotation
- Pseudoknot geometry with 3' bulge
- Broad Annotation
- No text annotation
- Motif group
- HL_40756.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
5T2A|1|A|G|1613
5T2A|1|A|G|1614
5T2A|1|A|C|1615
5T2A|1|A|A|1616
5T2A|1|A|C|1617
5T2A|1|A|U|1618
5T2A|1|A|C|1619
Current chains
- Chain A
- LSU-alpha
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain P
- uL22
- Chain R
- eL19
- Chain o
- eL39
Coloring options: