HL_5T2A_070

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUAUAUC

Length

8 nucleotides

Bulged bases

5T2A|1|A|U|1657

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T2A_070 not in the Motif Atlas

Geometric match to HL_5TBW_005

Geometric discrepancy: 0.2295

The information below is about HL_5TBW_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

5T2A|1|A|G|1651
5T2A|1|A|U|1652
5T2A|1|A|U|1653
5T2A|1|A|A|1654
5T2A|1|A|U|1655
5T2A|1|A|A|1656
5T2A|1|A|U|1657
5T2A|1|A|C|1658

Current chains

Chain A

LSU-alpha

Nearby chains

Chain B

Large subunit ribosomal RNA; LSU rRNA

Chain O

eL15

Chain l

eL37