HL_5T2A_072
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGAUUAUAUUC
- Length
- 11 nucleotides
- Bulged bases
- 5T2A|1|A|G|1752, 5T2A|1|A|U|1759, 5T2A|1|A|U|1760
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5T2A_072 not in the Motif Atlas
- Homologous match to HL_8C3A_035
- Geometric discrepancy: 0.2351
- The information below is about HL_8C3A_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_35087.1
- Basepair signature
- cWW-tWH-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
5T2A|1|A|G|1751
5T2A|1|A|G|1752
5T2A|1|A|A|1753
5T2A|1|A|U|1754
5T2A|1|A|U|1755
5T2A|1|A|A|1756
5T2A|1|A|U|1757
5T2A|1|A|A|1758
5T2A|1|A|U|1759
5T2A|1|A|U|1760
5T2A|1|A|C|1761
Current chains
- Chain A
- LSU-alpha
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain E
- srRNA1
- Chain R
- eL19
- Chain V
- uL23
- Chain h
- eL34
- Chain n
- eL38
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