HL_5T2A_075

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUCGC

Length

6 nucleotides

Bulged bases

5T2A|1|B|U|108

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T2A_075 not in the Motif Atlas

Geometric match to HL_4LFB_031

Geometric discrepancy: 0.0939

The information below is about HL_4LFB_031

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

62

Unit IDs

5T2A|1|B|G|106
5T2A|1|B|U|107
5T2A|1|B|U|108
5T2A|1|B|C|109
5T2A|1|B|G|110
5T2A|1|B|C|111

Current chains

Chain B

LSU-beta

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain m

eL43