HL_5T2A_084

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AACAGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T2A_084 not in the Motif Atlas

Homologous match to HL_8C3A_057

Geometric discrepancy: 0.2024

The information below is about HL_8C3A_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

5T2A|1|B|A|1036
5T2A|1|B|A|1037
5T2A|1|B|C|1038
5T2A|1|B|A|1039
5T2A|1|B|G|1040
5T2A|1|B|A|1041
5T2A|1|B|A|1042
5T2A|1|B|A|1043
5T2A|1|B|U|1044

Current chains

Chain B

LSU-beta

Nearby chains

Chain K

uL5