HL_5T2A_085

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CACAAGCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T2A_085 not in the Motif Atlas

Homologous match to HL_8C3A_058

Geometric discrepancy: 0.1615

The information below is about HL_8C3A_058

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

5T2A|1|B|C|1056
5T2A|1|B|A|1057
5T2A|1|B|C|1058
5T2A|1|B|A|1059
5T2A|1|B|A|1060
5T2A|1|B|G|1061
5T2A|1|B|C|1062
5T2A|1|B|G|1063

Current chains

Chain B

LSU-beta

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain J

uL16

Chain S

eL21