HL_5T2A_091

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUGUUCA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T2A_091 not in the Motif Atlas

Homologous match to HL_5TBW_063

Geometric discrepancy: 0.1009

The information below is about HL_5TBW_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36430.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5T2A|1|B|U|1294
5T2A|1|B|U|1295
5T2A|1|B|G|1296
5T2A|1|B|U|1297
5T2A|1|B|U|1298
5T2A|1|B|C|1299
5T2A|1|B|A|1300

Current chains

Chain B

LSU-beta

Nearby chains

Chain d

uL3