HL_5T2A_095

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAUGUGCUUGGCGCUG

Length

16 nucleotides

Bulged bases

5T2A|1|B|U|1450, 5T2A|1|B|G|1451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5T2A|1|B|C|1442
5T2A|1|B|A|1443
5T2A|1|B|U|1444
5T2A|1|B|G|1445
5T2A|1|B|U|1446
5T2A|1|B|G|1447
5T2A|1|B|C|1448
5T2A|1|B|U|1449
5T2A|1|B|U|1450
5T2A|1|B|G|1451
5T2A|1|B|G|1452
5T2A|1|B|C|1453
5T2A|1|B|G|1454
5T2A|1|B|C|1455
5T2A|1|B|U|1456
5T2A|1|B|G|1457

Current chains

Chain B

LSU-beta

Nearby chains

Chain H

srRNA4

Chain d

uL3