HL_5T2A_108
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UUGUGAAGGGA
- Length
- 11 nucleotides
- Bulged bases
- 5T2A|1|G|U|8, 5T2A|1|G|G|9, 5T2A|1|G|U|10
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5T2A_108 not in the Motif Atlas
- Geometric match to HL_3IGI_005
- Geometric discrepancy: 0.2864
- The information below is about HL_3IGI_005
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_52651.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 29
Unit IDs
5T2A|1|G|U|7
5T2A|1|G|U|8
5T2A|1|G|G|9
5T2A|1|G|U|10
5T2A|1|G|G|11
5T2A|1|G|A|12
5T2A|1|G|A|13
5T2A|1|G|G|14
5T2A|1|G|G|15
5T2A|1|G|G|16
5T2A|1|G|A|17
Current chains
- Chain G
- srRNA2
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain P
- uL22
Coloring options: