HL_5T2A_111
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUGAACGCCUCUAAG
- Length
- 15 nucleotides
- Bulged bases
- 5T2A|1|G|G|144
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5T2A_111 not in the Motif Atlas
- Homologous match to HL_8C3A_068
- Geometric discrepancy: 0.0865
- The information below is about HL_8C3A_068
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56677.9
- Basepair signature
- cWW-tWH-cWH-tSH-tHW-tHW-tSW
- Number of instances in this motif group
- 7
Unit IDs
5T2A|1|G|C|138
5T2A|1|G|U|139
5T2A|1|G|G|140
5T2A|1|G|A|141
5T2A|1|G|A|142
5T2A|1|G|C|143
5T2A|1|G|G|144
5T2A|1|G|C|145
5T2A|1|G|C|146
5T2A|1|G|U|147
5T2A|1|G|C|148
5T2A|1|G|U|149
5T2A|1|G|A|150
5T2A|1|G|A|151
5T2A|1|G|G|152
Current chains
- Chain G
- srRNA2
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain M
- uL13
- Chain q
- eL40
- Chain w
- uL6
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