HL_5T2A_112
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CCAAACGAG
- Length
- 9 nucleotides
- Bulged bases
- 5T2A|1|H|C|10
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5T2A_112 not in the Motif Atlas
- Geometric match to HL_5TBW_070
- Geometric discrepancy: 0.1553
- The information below is about HL_5TBW_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_64690.4
- Basepair signature
- cWW-cSW-F-F-F-cWW
- Number of instances in this motif group
- 9
Unit IDs
5T2A|1|H|C|9
5T2A|1|H|C|10
5T2A|1|H|A|11
5T2A|1|H|A|12
5T2A|1|H|A|13
5T2A|1|H|C|14
5T2A|1|H|G|15
5T2A|1|H|A|16
5T2A|1|H|G|17
Current chains
- Chain H
- srRNA4
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain G
- Large subunit ribosomal RNA; LSU rRNA
- Chain P
- uL22
- Chain d
- uL3
- Chain f
- eL31
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