HL_5T2A_119

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUUGAGUGUU

Length

10 nucleotides

Bulged bases

5T2A|1|2|G|1597

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T2A_119 not in the Motif Atlas

Homologous match to HL_8P9A_216

Geometric discrepancy: 0.5603

The information below is about HL_8P9A_216

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_98423.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5T2A|1|2|A|1592
5T2A|1|2|U|1593
5T2A|1|2|U|1594
5T2A|1|2|G|1595
5T2A|1|2|A|1596
5T2A|1|2|G|1597
5T2A|1|2|U|1598
5T2A|1|2|G|1599
5T2A|1|2|U|1600
5T2A|1|2|U|1601

Current chains

Chain 2

18S rRNA

Nearby chains

Chain AI

uS19