HL_5T2A_120

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAUCAAAAGA

Length

11 nucleotides

Bulged bases

5T2A|1|2|U|1917, 5T2A|1|2|C|1918

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5T2A|1|2|U|1914
5T2A|1|2|G|1915
5T2A|1|2|A|1916
5T2A|1|2|U|1917
5T2A|1|2|C|1918
5T2A|1|2|A|1919
5T2A|1|2|A|1920
5T2A|1|2|A|1921
5T2A|1|2|A|1922
5T2A|1|2|G|1923
5T2A|1|2|A|1924

Current chains

Chain 2

18S rRNA

Nearby chains

Chain AM

uS13

Chain AO

eS19