HL_5T2A_121

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AACCCUUCAU

Length

10 nucleotides

Bulged bases

5T2A|1|A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T2A_121 not in the Motif Atlas

Geometric match to HL_4QLM_002

Geometric discrepancy: 0.2529

The information below is about HL_4QLM_002

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_00911.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

5T2A|1|A|A|222
5T2A|1|A|A|223
5T2A|1|A|C|224
5T2A|1|A|C|225
5T2A|1|A|C|226
5T2A|1|A|U|227
5T2A|1|A|U|228
5T2A|1|A|C|229
5T2A|1|A|A|230
5T2A|1|A|U|231

Current chains

Chain A

LSU-alpha

Nearby chains

Chain G

Large subunit ribosomal RNA; LSU rRNA

Chain P

uL22