HL_5T2A_122
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UCUUGAAACA
- Length
- 10 nucleotides
- Bulged bases
- 5T2A|1|A|C|680
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5T2A_122 not in the Motif Atlas
- Homologous match to HL_8CRE_013
- Geometric discrepancy: 0.1238
- The information below is about HL_8CRE_013
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
5T2A|1|A|U|672
5T2A|1|A|C|673
5T2A|1|A|U|674
5T2A|1|A|U|675
5T2A|1|A|G|676
5T2A|1|A|A|677
5T2A|1|A|A|678
5T2A|1|A|A|679
5T2A|1|A|C|680
5T2A|1|A|A|681
Current chains
- Chain A
- LSU-alpha
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain Z
- uL15
- Chain d
- uL3
- Chain g
- eL32
Coloring options: