HL_5T2C_004
3D structure
- PDB id
- 5T2C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the human ribosome at 3.6 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CGCGGCG
- Length
- 7 nucleotides
- Bulged bases
- 5T2C|1|A|G|134, 5T2C|1|A|G|135, 5T2C|1|A|C|136
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5T2C_004 not in the Motif Atlas
- Geometric match to HL_2ZNI_001
- Geometric discrepancy: 0.2471
- The information below is about HL_2ZNI_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75660.7
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 22
Unit IDs
5T2C|1|A|C|131
5T2C|1|A|G|132
5T2C|1|A|C|133
5T2C|1|A|G|134
5T2C|1|A|G|135
5T2C|1|A|C|136
5T2C|1|A|G|137
Current chains
- Chain A
- 28S rRNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain b
- 60S ribosomal protein L35
- Chain d
- 60S ribosomal protein L37
- Chain t
- 60S ribosomal protein L15
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