5T2C Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5T2C_001 | 1/A/37:44 | No text annotation | homologous HL_8C3A_001 NA | |
| HL_5T2C_002 | 1/A/68:73 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_5T2C_003 | 1/A/89:95 | No text annotation | homologous HL_8C3A_003 NA | |
| HL_5T2C_004 | 1/A/131:137 | No text annotation | geometric HL_2ZNI_001 HL_75660.7 | |
| HL_5T2C_005 | 1/A/204:211 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_005 NA | |
| HL_5T2C_006 | 1/A/222:226 | No text annotation | homologous HL_8C3A_006 NA | |
| HL_5T2C_007 | 1/A/230:238 | T-loop with unstacked turn | homologous HL_8C3A_007 NA | |
| HL_5T2C_008 | 1/A/289:298 | No text annotation | homologous HL_8C3A_008 NA | |
| HL_5T2C_009 | 1/A/314:323 | Pseudoknot geometry | homologous HL_8C3A_009 NA | |
| HL_5T2C_010 | 1/A/368:373 | GNRA | homologous HL_8C3A_010 NA | |
| HL_5T2C_011 | 1/A/393:398 | GNRA | homologous HL_8C3A_011 NA | |
| HL_5T2C_015 | 1/A/1171:1190 | No text annotation | ||
| HL_5T2C_017 | 1/A/1317:1326 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_014 NA | |
| HL_5T2C_117 | 1/A/1364:1373 | No text annotation | ||
| HL_5T2C_019 | 1/A/1389:1394 | GNRA | homologous HL_8C3A_016 NA | |
| HL_5T2C_021 | 1/A/1436:1448 | No text annotation | ||
| HL_5T2C_022 | 1/A/1479:1486 | No text annotation | ||
| HL_5T2C_023 | 1/A/1561:1566 | GNRA | homologous HL_8C3A_019 NA | |
| HL_5T2C_133 | 1/A/1593:1602 | No text annotation | homologous HL_8CRE_019 NA | |
| HL_5T2C_025 | 1/A/1627:1635 | No text annotation | homologous HL_8C3A_021 NA | |
| HL_5T2C_026 | 1/A/1675:1680 | Externally structured | homologous HL_8C3A_022 NA | |
| HL_5T2C_134 | 1/A/1753:1777 | No text annotation | ||
| HL_5T2C_029 | 1/A/1864:1870 | GNRA | homologous HL_8C3A_025 NA | |
| HL_5T2C_030 | 1/A/1886:1893 | No text annotation | homologous HL_8C3A_026 NA | |
| HL_5T2C_033 | 1/A/2317:2322 | GNRA | homologous HL_8C3A_030 NA | |
| HL_5T2C_135 | 1/A/2376:2384 | T-loop with 2 stacked bulged bases | homologous HL_8CRE_030 NA | |
| HL_5T2C_035 | 1/A/2420:2426 | Pseudoknot geometry with 3' bulge | homologous HL_8C3A_032 NA | |
| HL_5T2C_036 | 1/A/2458:2463 | GNRA variation | homologous HL_8C3A_033 NA | |
| HL_5T2C_038 | 1/A/2523:2532 | No text annotation | homologous HL_8C3A_035 NA | |
| HL_5T2C_040 | 1/A/2578:2583 | GNRA | homologous HL_8C3A_036 NA | |
| HL_5T2C_041 | 1/A/2624:2632 | No text annotation | homologous HL_8C3A_037 NA | |
| HL_5T2C_042 | 1/A/2664:2670 | No text annotation | homologous HL_8C3A_038 NA | |
| HL_5T2C_043 | 1/A/2704:2712 | No text annotation | geometric HL_5NFV_001 HL_69752.4 | |
| HL_5T2C_044 | 1/A/2738:2742 | No text annotation | homologous HL_8C3A_040 NA | |
| HL_5T2C_045 | 1/A/2792:2799 | No text annotation | homologous HL_8C3A_041 NA | |
| HL_5T2C_046 | 1/A/2810:2816 | GNRA | homologous HL_8C3A_042 NA | |
| HL_5T2C_047 | 1/A/2872:2877 | UNCG | homologous HL_8C3A_043 NA | |
| HL_5T2C_049 | 1/A/3614:3618 | No text annotation | homologous HL_8C3A_045 NA | |
| HL_5T2C_050 | 1/A/3639:3649 | No text annotation | homologous HL_8C3A_046 NA | |
| HL_5T2C_051 | 1/A/3668:3674 | GNRA | homologous HL_8C3A_047 NA | |
| HL_5T2C_052 | 1/A/3724:3729 | GNRA | homologous HL_8C3A_048 NA | |
| HL_5T2C_054 | 1/A/3796:3804 | No text annotation | homologous HL_8C3A_050 NA | |
| HL_5T2C_055 | 1/A/3873:3882 | No text annotation | homologous HL_8C3A_051 NA | |
| HL_5T2C_121 | 1/A/4191:4204 | No text annotation | ||
| HL_5T2C_059 | 1/A/4192:4202 | No text annotation | geometric HL_4V83_139 NA | |
| HL_5T2C_060 | 1/A/4210:4222 | No text annotation | homologous HL_8C3A_056 NA | |
| HL_5T2C_061 | 1/A/4250:4258 | No text annotation | homologous HL_8C3A_057 NA | |
| HL_5T2C_062 | 1/A/4270:4277 | Pseudoknot geometry | homologous HL_8C3A_058 NA | |
| HL_5T2C_063 | 1/A/4301:4309 | No text annotation | homologous HL_8C3A_059 NA | |
| HL_5T2C_064 | 1/A/4321:4326 | GNRA | homologous HL_8C3A_060 NA | |
| HL_5T2C_065 | 1/A/4352:4362 | No text annotation | geometric HL_2ZZM_002 HL_33487.1 | |
| HL_5T2C_066 | 1/A/4417:4425 | No text annotation | homologous HL_8C3A_062 NA | |
| HL_5T2C_067 | 1/A/4474:4481 | No text annotation | homologous HL_8C3A_063 NA | |
| HL_5T2C_068 | 1/A/4497:4503 | No text annotation | geometric HL_4WF9_058 HL_48677.1 | |
| HL_5T2C_069 | 1/A/4540:4545 | GNRA | homologous HL_8C3A_065 NA | |
| HL_5T2C_070 | 1/A/4603:4608 | GNRA | homologous HL_8C3A_066 NA | |
| HL_5T2C_071 | 1/A/4646:4651 | Ribsomal LSU H95 | homologous HL_8C3A_067 NA | |
| HL_5T2C_072 | 1/A/4688:4702 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_5T2C_074 | 1/A/4907:4914 | No text annotation | geometric HL_5NFV_001 HL_69752.4 | |
| HL_5T2C_075 | 1/A/4975:4983 | No text annotation | homologous HL_8C3A_071 NA | |
| HL_5T2C_077 | 1/AA/7:17 | No text annotation | homologous HL_4V88_186 NA | |
| HL_5T2C_078 | 1/AA/69:80 | No text annotation | ||
| HL_5T2C_136 | 1/AA/152:166 | No text annotation | ||
| HL_5T2C_079 | 1/AA/156:162 | No text annotation | ||
| HL_5T2C_080 | 1/AA/194:205 | No text annotation | ||
| HL_5T2C_081 | 1/AA/288:295 | T-loop with 1 bulged base | homologous HL_8C3A_197 NA | |
| HL_5T2C_137 | 1/AA/317:333 | No text annotation | ||
| HL_5T2C_083 | 1/AA/377:387 | No text annotation | ||
| HL_5T2C_084 | 1/AA/416:421 | No text annotation | homologous HL_4V88_194 NA | |
| HL_5T2C_138 | 1/AA/441:452 | No text annotation | homologous HL_8CRE_200 HL_86432.1 | |
| HL_5T2C_086 | 1/AA/461:469 | No text annotation | ||
| HL_5T2C_123 | 1/AA/497:505 | tRNA D-loop | geometric HL_4V90_032 NA | |
| HL_5T2C_124 | 1/AA/527:558 | No text annotation | ||
| HL_5T2C_088 | 1/AA/534:549 | No text annotation | ||
| HL_5T2C_089 | 1/AA/566:584 | No text annotation | ||
| HL_5T2C_090 | 1/AA/618:623 | GNRA variation | homologous HL_4V88_200 NA | |
| HL_5T2C_125 | 1/AA/833:841 | No text annotation | geometric HL_8KAL_003 HL_75660.7 | |
| HL_5T2C_093 | 1/AA/957:966 | No text annotation | homologous HL_4V88_206 NA | |
| HL_5T2C_094 | 1/AA/994:999 | GNRA | homologous HL_4V88_207 NA | |
| HL_5T2C_095 | 1/AA/1054:1064 | No text annotation | homologous HL_4V88_208 NA | |
| HL_5T2C_096 | 1/AA/1112:1121 | No text annotation | ||
| HL_5T2C_097 | 1/AA/1141:1146 | GNRA | homologous HL_4V88_210 NA | |
| HL_5T2C_098 | 1/AA/1178:1183 | GNRA | homologous HL_4V88_211 NA | |
| HL_5T2C_099 | 1/AA/1245:1254 | No text annotation | homologous HL_4V88_212 NA | |
| HL_5T2C_100 | 1/AA/1353:1358 | GNRA | homologous HL_4V88_214 NA | |
| HL_5T2C_126 | 1/AA/1363:1375 | No text annotation | ||
| HL_5T2C_101 | 1/AA/1366:1373 | No text annotation | homologous HL_4V88_215 NA | |
| HL_5T2C_127 | 1/AA/1411:1434 | No text annotation | ||
| HL_5T2C_103 | 1/AA/1460:1466 | GNRA | homologous HL_4V88_217 NA | |
| HL_5T2C_139 | 1/AA/1565:1570 | GNRA | homologous HL_8P9A_221 HL_34789.4 | |
| HL_5T2C_105 | 1/AA/1613:1626 | No text annotation | geometric HL_6ZDU_001 NA | |
| HL_5T2C_106 | 1/AA/1656:1668 | No text annotation | ||
| HL_5T2C_140 | 1/AA/1748:1786 | No text annotation | ||
| HL_5T2C_108 | 1/AA/1846:1853 | No text annotation | geometric HL_8KAH_003 NA | |
| HL_5T2C_131 | 1/B/32:45 | No text annotation | homologous HL_9DFE_067 HL_97756.3 | |
| HL_5T2C_111 | 1/B/36:41 | No text annotation | homologous HL_5TBW_185 NA | |
| HL_5T2C_112 | 1/B/86:91 | GNRA | homologous HL_5TBW_186 NA | |
| HL_5T2C_113 | 1/C/47:56 | Pseudoknot with intercalation | geometric HL_4V9F_001 HL_17803.1 | |
| HL_5T2C_114 | 1/C/68:90 | No text annotation | homologous HL_8C3A_075 NA | |
| HL_5T2C_115 | 1/C/107:112 | No text annotation | homologous HL_5TBW_075 NA | |
| HL_5T2C_116 | 1/C/121:129 | No text annotation | geometric HL_5NFV_001 HL_69752.4 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5T2C_012 | No text annotation | ||
| HL_5T2C_013 | No text annotation | ||
| HL_5T2C_014 | No text annotation | ||
| HL_5T2C_016 | No text annotation | ||
| HL_5T2C_018 | No text annotation | ||
| HL_5T2C_020 | No text annotation | ||
| HL_5T2C_118 | No text annotation | ||
| HL_5T2C_132 | No text annotation | ||
| HL_5T2C_024 | No text annotation | ||
| HL_5T2C_027 | No text annotation | ||
| HL_5T2C_028 | No text annotation | ||
| HL_5T2C_031 | No text annotation | ||
| HL_5T2C_032 | No text annotation | ||
| HL_5T2C_034 | No text annotation | ||
| HL_5T2C_037 | No text annotation | ||
| HL_5T2C_039 | GNRA | ||
| HL_5T2C_119 | No text annotation | ||
| HL_5T2C_048 | No text annotation | ||
| HL_5T2C_053 | No text annotation | ||
| HL_5T2C_056 | No text annotation | ||
| HL_5T2C_057 | No text annotation | ||
| HL_5T2C_058 | No text annotation | ||
| HL_5T2C_120 | No text annotation | ||
| HL_5T2C_073 | No text annotation | ||
| HL_5T2C_076 | No text annotation | ||
| HL_5T2C_122 | No text annotation | ||
| HL_5T2C_082 | No text annotation | ||
| HL_5T2C_085 | No text annotation | ||
| HL_5T2C_087 | No text annotation | ||
| HL_5T2C_091 | No text annotation | ||
| HL_5T2C_092 | No text annotation | ||
| HL_5T2C_102 | No text annotation | ||
| HL_5T2C_128 | No text annotation | ||
| HL_5T2C_104 | No text annotation | ||
| HL_5T2C_107 | No text annotation | ||
| HL_5T2C_129 | No text annotation | ||
| HL_5T2C_130 | No text annotation | ||
| HL_5T2C_109 | No text annotation | ||
| HL_5T2C_110 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5T2C_001 | 1/A/6:7, 1/C/149:151 | Single bulged C | geometric IL_1DQF_001 NA | |
| IL_5T2C_002 | 1/A/12:14, 1/C/143:144 | Single bulged U | homologous IL_8C3A_003 NA | |
| IL_5T2C_003 | 1/A/16:18, 1/C/139:141 | Isolated cWH basepair | geometric IL_4J50_001 IL_10892.2 | |
| IL_5T2C_004 | 1/A/26:27, 1/A/55:57 | No text annotation | homologous IL_8C3A_004 NA | |
| IL_5T2C_005 | 1/A/30:37, 1/A/44:52 | 9x8 Sarcin-Ricin; G-bulge | geometric IL_4WF9_008 IL_93502.1 | |
| IL_5T2C_006 | 1/A/81:88, 1/A/96:102 | No text annotation | homologous IL_8C3A_006 NA | |
| IL_5T2C_007 | 1/A/118:121, 1/A/152:153 | Major groove intercalation | geometric IL_1U9S_003 IL_71421.2 | |
| IL_5T2C_206 | 1/A/118:122, 1/A/147:153 | No text annotation | ||
| IL_5T2C_008 | 1/A/121:122, 1/A/147:152 | No text annotation | geometric IL_5TBW_007 NA | |
| IL_5T2C_009 | 1/A/125:126, 1/A/142:144 | Single bulged C | geometric IL_5TBW_069 NA | |
| IL_5T2C_207 | 1/A/168:174, 1/A/263:267 | No text annotation | ||
| IL_5T2C_260 | 1/A/180:184, 1/A/253:256 | No text annotation | ||
| IL_5T2C_261 | 1/A/180:189, 1/A/252:256 | No text annotation | ||
| IL_5T2C_011 | 1/A/184:189, 1/A/252:253 | No text annotation | ||
| IL_5T2C_012 | 1/A/195:196, 1/A/244:246 | Single bulged C | geometric IL_3D0U_001 IL_05642.2 | |
| IL_5T2C_013 | 1/A/199:201, 1/A/214:215 | Single bulged U | homologous IL_8C3A_013 NA | |
| IL_5T2C_014 | 1/A/339:342, 1/C/32:33 | Minor groove platform | geometric IL_7RQB_073 NA | |
| IL_5T2C_015 | 1/A/348:350, 1/C/25:26 | Single bulged A | homologous IL_8C3A_014 NA | |
| IL_5T2C_016 | 1/A/387:390, 1/A/401:414 | No text annotation | homologous IL_8C3A_015 NA | |
| IL_5T2C_017 | 1/A/415:421, 1/C/13:19 | Triple sheared with non-canonical cWW | homologous IL_5TBW_015 NA | |
| IL_5T2C_018 | 1/A/443:446, 1/A/1300:1304 | No text annotation | ||
| IL_5T2C_262 | 1/A/459:460, 1/A/695:697 | Major groove platform | geometric IL_7EOG_001 IL_48076.8 | |
| IL_5T2C_020 | 1/A/462:465, 1/A/690:693 | Tandem non-canonical cWW pairs | geometric IL_1MFQ_004 IL_15225.2 | |
| IL_5T2C_211 | 1/A/466:472, 1/A/682:689 | No text annotation | ||
| IL_5T2C_022 | 1/A/482:487, 1/A/669:672 | Tandem non-canonical cWW pairs | geometric IL_6CZR_168 NA | |
| IL_5T2C_212 | 1/A/488:489, 1/A/664:668 | No text annotation | ||
| IL_5T2C_264 | 1/A/499:504, 1/A/654:656 | No text annotation | ||
| IL_5T2C_216 | 1/A/508:510, 1/A/649:650 | Single bulged A | geometric IL_5TBW_060 NA | |
| IL_5T2C_028 | 1/A/708:709, 1/A/1287:1289 | Single bulged G | geometric IL_4LFB_036 IL_28408.2 | |
| IL_5T2C_029 | 1/A/722:724, 1/A/942:946 | No text annotation | ||
| IL_5T2C_030 | 1/A/726:731, 1/A/938:940 | No text annotation | ||
| IL_5T2C_217 | 1/A/726:735, 1/A/928:940 | No text annotation | ||
| IL_5T2C_031 | 1/A/731:735, 1/A/928:938 | No text annotation | ||
| IL_5T2C_032 | 1/A/737:740, 1/A/924:926 | No text annotation | geometric IL_4V84_070 NA | |
| IL_5T2C_033 | 1/A/740:742, 1/A/922:924 | Isolated non-canonical cWW pair | geometric IL_1T0E_002 IL_71625.3 | |
| IL_5T2C_034 | 1/A/743:749, 1/A/914:921 | No text annotation | ||
| IL_5T2C_035 | 1/A/749:752, 1/A/911:914 | Tandem non-canonical cWW pairs | geometric IL_4WF9_109 NA | |
| IL_5T2C_038 | 1/A/1086:1087, 1/A/1209:1211 | Single bulged C | geometric IL_1S03_006 IL_05642.2 | |
| IL_5T2C_040 | 1/A/1357:1360, 1/A/1378:1382 | No text annotation | ||
| IL_5T2C_041 | 1/A/1360:1361, 1/A/1376:1378 | No text annotation | ||
| IL_5T2C_042 | 1/A/1425:1429, 1/A/1455:1460 | Triple sheared related | geometric IL_4V9F_018 IL_67427.1 | |
| IL_5T2C_043 | 1/A/1431:1434, 1/A/1450:1453 | Double sheared | geometric IL_3D0U_002 IL_58355.2 | |
| IL_5T2C_044 | 1/A/1467:1468, 1/A/1496:1498 | Single bulged A | homologous IL_8C3A_026 NA | |
| IL_5T2C_045 | 1/A/1474:1476, 1/A/1489:1490 | Single stack bend | geometric IL_7A0S_005 IL_15011.2 | |
| IL_5T2C_046 | 1/A/1520:1522, 1/A/1655:1657 | Isolated non-canonical cWW pair | homologous IL_8C3A_029 NA | |
| IL_5T2C_047 | 1/A/1522:1526, 1/A/1648:1655 | No text annotation | homologous IL_8C3A_030 NA | |
| IL_5T2C_048 | 1/A/1550:1551, 1/A/1576:1578 | Single bulged G | homologous IL_8C3A_032 NA | |
| IL_5T2C_049 | 1/A/1551:1555, 1/A/1572:1576 | Triple sheared | homologous IL_8C3A_033 NA | |
| IL_5T2C_050 | 1/A/1586:1589, 1/A/1605:1607 | Major groove platform with extra cWW | homologous IL_8C3A_034 NA | |
| IL_5T2C_051 | 1/A/1590:1592, 1/A/1603:1604 | Single bulged U | geometric IL_5TBW_032 NA | |
| IL_5T2C_052 | 1/A/1624:1626, 1/A/1636:1640 | Multiple bulged bases | geometric IL_7A0S_021 IL_89509.1 | |
| IL_5T2C_053 | 1/A/1671:1673, 1/A/1682:1684 | Isolated non-canonical cWW pair | homologous IL_8C3A_037 NA | |
| IL_5T2C_054 | 1/A/1686:1688, 1/A/1848:1851 | No text annotation | ||
| IL_5T2C_056 | 1/A/1732:1737, 1/A/1792:1797 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_7A0S_027 NA | |
| IL_5T2C_057 | 1/A/1737:1738, 1/A/1790:1792 | Minor groove platform | geometric IL_5TBW_039 NA | |
| IL_5T2C_058 | 1/A/1739:1744, 1/A/1786:1789 | C-loop with bulged stacked A's | homologous IL_8C3A_043 NA | |
| IL_5T2C_059 | 1/A/1746:1749, 1/A/1781:1784 | Tandem non-canonical cWW pairs | geometric IL_5TBW_041 NA | |
| IL_5T2C_060 | 1/A/1749:1751, 1/A/1779:1781 | Isolated non-canonical cWW pair | geometric IL_5TBW_042 NA | |
| IL_5T2C_061 | 1/A/1858:1860, 1/A/1874:1876 | Isolated non-canonical cWW pair | homologous IL_8C3A_049 NA | |
| IL_5T2C_062 | 1/A/1905:1909, 1/A/2067:2071 | UAA/GAN | homologous IL_8C3A_051 NA | |
| IL_5T2C_063 | 1/A/1911:1918, 1/A/2064:2065 | SSU/LSU pseudoknot | homologous IL_8C3A_052 NA | |
| IL_5T2C_064 | 1/A/1918:1920, 1/A/2063:2064 | No text annotation | ||
| IL_5T2C_065 | 1/A/1920:1922, 1/A/2062:2063 | No text annotation | ||
| IL_5T2C_220 | 1/A/1926:1933, 1/A/2053:2058 | No text annotation | homologous IL_8C3A_054 NA | |
| IL_5T2C_221 | 1/A/1933:1944, 1/A/2038:2053 | No text annotation | homologous IL_8P9A_280 IL_34501.1 | |
| IL_5T2C_067 | 1/A/1946:1948, 1/A/2035:2036 | Single bulged U | homologous IL_8C3A_056 NA | |
| IL_5T2C_069 | 1/A/2083:2085, 1/A/2272:2273 | No text annotation | ||
| IL_5T2C_070 | 1/A/2290:2292, 1/A/2342:2345 | No text annotation | homologous IL_8C3A_061 NA | |
| IL_5T2C_071 | 1/A/2299:2301, 1/A/2334:2335 | Single bulged A | homologous IL_8C3A_062 NA | |
| IL_5T2C_072 | 1/A/2302:2309, 1/A/2329:2333 | Kink-turn | homologous IL_8C3A_063 NA | |
| IL_5T2C_073 | 1/A/2312:2314, 1/A/2325:2326 | Single bulged A | geometric IL_5WWT_001 IL_14190.2 | |
| IL_5T2C_074 | 1/A/2358:2364, 1/A/3858:3863 | No text annotation | homologous IL_8C3A_065 NA | |
| IL_5T2C_075 | 1/A/2415:2419, 1/A/2427:2429 | C-loop | geometric IL_7A0S_047 IL_06671.1 | |
| IL_5T2C_076 | 1/A/2446:2450, 1/A/2509:2514 | UAA/GAN | homologous IL_8C3A_067 NA | |
| IL_5T2C_077 | 1/A/2477:2479, 1/A/2499:2500 | Single stack bend | geometric IL_4LFB_041 IL_15011.2 | |
| IL_5T2C_078 | 1/A/2542:2547, 1/A/2772:2774 | Isolated non-canonical cWW pair | geometric IL_1U6B_001 IL_42997.5 | |
| IL_5T2C_079 | 1/A/2589:2593, 1/A/2752:2756 | Triple sheared | homologous IL_8C3A_073 NA | |
| IL_5T2C_080 | 1/A/2613:2614, 1/A/2724:2726 | Single bulged A | geometric IL_4P3U_002 IL_14190.2 | |
| IL_5T2C_081 | 1/A/2614:2615, 1/A/2722:2724 | Single stack bend | homologous IL_8C3A_076 NA | |
| IL_5T2C_082 | 1/A/2646:2648, 1/A/2685:2688 | Isolated tHS basepair with bulges | geometric IL_4V9F_076 IL_87316.2 | |
| IL_5T2C_083 | 1/A/2651:2653, 1/A/2681:2682 | Single bulged G | geometric IL_3NDB_004 NA | |
| IL_5T2C_084 | 1/A/2656:2662, 1/A/2672:2678 | No text annotation | homologous IL_8C3A_079 NA | |
| IL_5T2C_085 | 1/A/2832:2838, 1/A/3850:3853 | No text annotation | homologous IL_8C3A_080 NA | |
| IL_5T2C_086 | 1/A/2844:2846, 1/A/3842:3844 | No text annotation | homologous IL_8C3A_081 NA | |
| IL_5T2C_087 | 1/A/2847:2850, 1/A/3840:3841 | Major groove platform; stack outside cWW | geometric IL_5TBW_076 NA | |
| IL_5T2C_223 | 1/A/2847:2855, 1/A/3837:3841 | No text annotation | homologous IL_8C3A_484 NA | |
| IL_5T2C_088 | 1/A/2850:2855, 1/A/3837:3840 | No text annotation | homologous IL_8C3A_083 NA | |
| IL_5T2C_089 | 1/A/2867:2872, 1/A/2877:2883 | tSH-tSH-tHH-tHS | geometric IL_4V9F_063 IL_20700.1 | |
| IL_5T2C_090 | 1/A/2889:2891, 1/A/3610:3612 | Isolated non-canonical cWW pair | homologous IL_8C3A_085 NA | |
| IL_5T2C_091 | 1/A/2896:2897, 1/A/3602:3605 | No text annotation | homologous IL_8C3A_086 NA | |
| IL_5T2C_093 | 1/A/3632:3633, 1/A/3827:3829 | Single bulged A | homologous IL_8C3A_087 NA | |
| IL_5T2C_094 | 1/A/3660:3665, 1/A/3677:3684 | No text annotation | homologous IL_8C3A_088 NA | |
| IL_5T2C_224 | 1/A/3700:3703, 1/A/3749:3750 | No text annotation | homologous IL_8C3A_089 NA | |
| IL_5T2C_096 | 1/A/3704:3705, 1/A/3745:3748 | Stack outside cWW | geometric IL_6JQ6_004 IL_77710.1 | |
| IL_5T2C_225 | 1/A/3708:3714, 1/A/3739:3742 | No text annotation | ||
| IL_5T2C_226 | 1/A/3714:3721, 1/A/3732:3739 | No text annotation | ||
| IL_5T2C_097 | 1/A/3780:3781, 1/A/3811:3814 | No text annotation | homologous IL_8C3A_094 NA | |
| IL_5T2C_098 | 1/A/3781:3792, 1/A/3808:3811 | No text annotation | geometric IL_5TBW_090 NA | |
| IL_5T2C_099 | 1/A/3895:3898, 1/A/4563:4565 | No text annotation | homologous IL_8C3A_096 NA | |
| IL_5T2C_100 | 1/A/3900:3902, 1/A/4558:4561 | No text annotation | homologous IL_8C3A_097 NA | |
| IL_5T2C_101 | 1/A/3913:3915, 1/A/4388:4389 | Single bulged U | homologous IL_8C3A_098 NA | |
| IL_5T2C_102 | 1/A/3916:3917, 1/A/4384:4387 | Minor groove platform | homologous IL_8C3A_099 NA | |
| IL_5T2C_103 | 1/A/3927:3929, 1/A/4181:4184 | No text annotation | homologous IL_8C3A_100 NA | |
| IL_5T2C_105 | 1/A/4082:4088, 1/A/4161:4164 | No text annotation | homologous IL_8C3A_106 NA | |
| IL_5T2C_229 | 1/A/4091:4129, 1/A/4155:4158 | No text annotation | ||
| IL_5T2C_106 | 1/A/4191:4192, 1/A/4202:4204 | Single bulged A | geometric IL_5TBW_098 NA | |
| IL_5T2C_107 | 1/A/4243:4245, 1/A/4263:4267 | Isolated tHS basepair with bulges | geometric IL_5TBW_099 NA | |
| IL_5T2C_267 | 1/A/4291:4293, 1/A/4317:4318 | Single bulged A | geometric IL_7MKY_001 IL_14190.2 | |
| IL_5T2C_109 | 1/A/4295:4298, 1/A/4312:4315 | Tandem non-canonical cWW pairs | homologous IL_8C3A_109 NA | |
| IL_5T2C_110 | 1/A/4347:4350, 1/A/4364:4365 | Single stack bend | geometric IL_7RQB_058 NA | |
| IL_5T2C_111 | 1/A/4400:4401, 1/A/4442:4444 | Major groove platform | geometric IL_5TBW_102 NA | |
| IL_5T2C_230 | 1/A/4400:4403, 1/A/4440:4444 | No text annotation | homologous IL_8C3A_111 NA | |
| IL_5T2C_112 | 1/A/4401:4403, 1/A/4440:4442 | Isolated non-canonical cWW pair | geometric IL_5TBW_103 NA | |
| IL_5T2C_113 | 1/A/4403:4405, 1/A/4439:4440 | Major groove platform | geometric IL_5TBW_104 NA | |
| IL_5T2C_114 | 1/A/4405:4407, 1/A/4435:4439 | Major groove minor groove platform with extra cWW | homologous IL_8C3A_113 NA | |
| IL_5T2C_115 | 1/A/4412:4416, 1/A/4426:4430 | No text annotation | homologous IL_8C3A_114 NA | |
| IL_5T2C_116 | 1/A/4453:4454, 1/A/4526:4528 | Major groove platform | homologous IL_8C3A_115 NA | |
| IL_5T2C_117 | 1/A/4456:4458, 1/A/4520:4524 | Isolated non-canonical cWW with bulges | geometric IL_5TBW_108 NA | |
| IL_5T2C_118 | 1/A/4458:4459, 1/A/4517:4520 | No text annotation | homologous IL_8C3A_117 NA | |
| IL_5T2C_119 | 1/A/4466:4468, 1/A/4489:4491 | Isolated non-canonical cWW pair | geometric IL_5TBW_110 NA | |
| IL_5T2C_120 | 1/A/4468:4470, 1/A/4485:4489 | No text annotation | ||
| IL_5T2C_121 | 1/A/4495:4497, 1/A/4503:4505 | Isolated non-canonical cWW pair | homologous IL_8C3A_120 NA | |
| IL_5T2C_122 | 1/A/4537:4538, 1/A/4547:4549 | Single bulged A | homologous IL_8C3A_122 NA | |
| IL_5T2C_123 | 1/A/4580:4582, 1/A/4721:4723 | No text annotation | geometric IL_3ICQ_003 NA | |
| IL_5T2C_124 | 1/A/4582:4585, 1/A/4717:4721 | Double sheared | geometric IL_5J7L_256 NA | |
| IL_5T2C_125 | 1/A/4590:4592, 1/A/4618:4620 | Isolated non-canonical cWW pair | homologous IL_8C3A_124 NA | |
| IL_5T2C_126 | 1/A/4596:4603, 1/A/4608:4614 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5TBW_116 NA | |
| IL_5T2C_127 | 1/A/4624:4629, 1/A/4669:4673 | No text annotation | ||
| IL_5T2C_128 | 1/A/4632:4637, 1/A/4662:4666 | UAA/GAN related | homologous IL_8C3A_127 NA | |
| IL_5T2C_129 | 1/A/4638:4640, 1/A/4659:4661 | Isolated cWH basepair | geometric IL_3R1C_012 IL_10892.2 | |
| IL_5T2C_268 | 1/A/4641:4642, 1/A/4655:4658 | No text annotation | homologous IL_8CRE_128 NA | |
| IL_5T2C_131 | 1/A/4680:4685, 1/A/4705:4710 | UAA/GAN with extra cWW | geometric IL_5J7L_350 NA | |
| IL_5T2C_269 | 1/A/4739:4746, 1/A/4954:4960 | No text annotation | ||
| IL_5T2C_231 | 1/A/4755:4765, 1/A/4869:4878 | No text annotation | ||
| IL_5T2C_134 | 1/A/4768:4775, 1/A/4861:4866 | Tandem non-canonical cWW pairs | geometric IL_7A0S_040 IL_71194.2 | |
| IL_5T2C_135 | 1/A/4884:4889, 1/A/4930:4935 | No text annotation | geometric IL_5TBW_476 NA | |
| IL_5T2C_136 | 1/A/4891:4896, 1/A/4924:4928 | No text annotation | ||
| IL_5T2C_138 | 1/A/4992:4994, 1/A/5057:5059 | Isolated non-canonical cWW pair | geometric IL_3IVK_002 IL_01003.3 | |
| IL_5T2C_139 | 1/A/4996:4997, 1/A/5053:5055 | Single bulged C | geometric IL_1KUQ_002 IL_05642.2 | |
| IL_5T2C_140 | 1/A/5000:5002, 1/A/5045:5050 | No text annotation | homologous IL_8C3A_138 NA | |
| IL_5T2C_141 | 1/A/5003:5009, 1/A/5039:5044 | No text annotation | ||
| IL_5T2C_142 | 1/A/5012:5014, 1/A/5035:5036 | Single bulged U | homologous IL_8C3A_140 NA | |
| IL_5T2C_143 | 1/A/5014:5017, 1/A/5032:5035 | Double sheared; A in syn | geometric IL_5TBW_135 NA | |
| IL_5T2C_270 | 1/AA/10:12, 1/AA/1199:1201 | Isolated non-canonical cWW pair | geometric IL_8C3A_474 NA | |
| IL_5T2C_271 | 1/AA/22:25, 1/AA/649:652 | Tandem non-canonical cWW pairs | geometric IL_4K27_001 IL_15225.2 | |
| IL_5T2C_146 | 1/AA/34:36, 1/AA/519:521 | Isolated non-canonical cWW pair | homologous IL_4V88_385 NA | |
| IL_5T2C_147 | 1/AA/41:49, 1/AA/477:481 | No text annotation | ||
| IL_5T2C_148 | 1/AA/56:62, 1/AA/86:89 | No text annotation | ||
| IL_5T2C_149 | 1/AA/63:69, 1/AA/80:85 | No text annotation | ||
| IL_5T2C_235 | 1/AA/108:110, 1/AA/351:353 | Isolated non-canonical cWW pair | geometric IL_1MFQ_002 IL_71625.3 | |
| IL_5T2C_272 | 1/AA/110:121, 1/AA/343:351 | No text annotation | ||
| IL_5T2C_151 | 1/AA/115:122, 1/AA/342:348 | No text annotation | ||
| IL_5T2C_152 | 1/AA/151:156, 1/AA/162:167 | No text annotation | geometric IL_5TBW_476 NA | |
| IL_5T2C_156 | 1/AA/359:364, 1/AA/396:403 | Kink-turn with non-sequential stacking | homologous IL_4V88_402 NA | |
| IL_5T2C_274 | 1/AA/366:371, 1/AA/393:394 | No text annotation | homologous IL_8P9A_392 IL_01372.1 | |
| IL_5T2C_158 | 1/AA/411:413, 1/AA/424:429 | No text annotation | homologous IL_4V88_404 NA | |
| IL_5T2C_159 | 1/AA/437:439, 1/AA/454:456 | Isolated cWH basepair | homologous IL_4V88_405 NA | |
| IL_5T2C_275 | 1/AA/487:489, 1/AA/511:512 | No text annotation | homologous IL_8CRE_413 IL_97561.3 | |
| IL_5T2C_161 | 1/AA/491:496, 1/AA/506:509 | C-loop with extra cWW pair | geometric IL_4V88_408 NA | |
| IL_5T2C_237 | 1/AA/491:497, 1/AA/505:509 | No text annotation | ||
| IL_5T2C_162 | 1/AA/527:534, 1/AA/549:558 | No text annotation | ||
| IL_5T2C_238 | 1/AA/599:608, 1/AA/635:637 | Isolated cWH basepair | geometric IL_8AF0_002 IL_10892.2 | |
| IL_5T2C_164 | 1/AA/610:617, 1/AA/624:633 | No text annotation | ||
| IL_5T2C_165 | 1/AA/663:665, 1/AA/1162:1164 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 IL_01003.3 | |
| IL_5T2C_276 | 1/AA/663:671, 1/AA/1161:1164 | No text annotation | ||
| IL_5T2C_240 | 1/AA/673:675, 1/AA/1030:1032 | Isolated non-canonical cWW pair | homologous IL_8P9A_406 IL_01003.3 | |
| IL_5T2C_277 | 1/AA/676:680, 1/AA/1025:1029 | tSH-tHW-tHS | homologous IL_8CRE_426 IL_05821.1 | |
| IL_5T2C_168 | 1/AA/805:807, 1/AA/856:858 | Isolated non-canonical cWW pair | homologous IL_8P9A_413 IL_71625.3 | |
| IL_5T2C_241 | 1/AA/805:832, 1/AA/842:858 | No text annotation | ||
| IL_5T2C_169 | 1/AA/831:832, 1/AA/842:844 | Single stack bend | geometric IL_5J7L_032 NA | |
| IL_5T2C_242 | 1/AA/873:884, 1/AA/902:912 | No text annotation | ||
| IL_5T2C_278 | 1/AA/925:926, 1/AA/1015:1017 | Single bulged U | geometric IL_3NDB_005 NA | |
| IL_5T2C_171 | 1/AA/927:931, 1/AA/1010:1014 | No text annotation | geometric IL_5TBW_121 NA | |
| IL_5T2C_172 | 1/AA/931:935, 1/AA/1007:1010 | Tandem non-canonical cWW pairs | geometric IL_4V88_431 NA | |
| IL_5T2C_279 | 1/AA/942:945, 1/AA/981:984 | Tandem non-canonical cWW pairs | homologous IL_8CRE_435 IL_15225.2 | |
| IL_5T2C_280 | 1/AA/952:956, 1/AA/967:974 | Kink-turn | geometric IL_6UFM_001 IL_71972.1 | |
| IL_5T2C_175 | 1/AA/1042:1047, 1/AA/1071:1073 | Other IL | homologous IL_4V88_435 NA | |
| IL_5T2C_245 | 1/AA/1047:1051, 1/AA/1067:1071 | tSH-tHW-tHS | homologous IL_8C3A_442 NA | |
| IL_5T2C_177 | 1/AA/1091:1093, 1/AA/1152:1158 | No text annotation | homologous IL_4V88_437 NA | |
| IL_5T2C_178 | 1/AA/1097:1103, 1/AA/1129:1135 | No text annotation | ||
| IL_5T2C_281 | 1/AA/1098:1105, 1/AA/1127:1134 | No text annotation | ||
| IL_5T2C_282 | 1/AA/1108:1110, 1/AA/1123:1124 | Single stack bend | geometric IL_9DFE_057 IL_15011.2 | |
| IL_5T2C_180 | 1/AA/1168:1176, 1/AA/1185:1191 | 9x7 Sarcin-Ricin with inserted C; G-bulge | geometric IL_6CZR_146 NA | |
| IL_5T2C_181 | 1/AA/1203:1205, 1/AA/1693:1696 | Isolated non-canonical cWW with bulges | geometric IL_3KTW_002 NA | |
| IL_5T2C_182 | 1/AA/1205:1208, 1/AA/1691:1693 | Isolated non-canonical cWW pair | geometric IL_4J39_001 IL_01003.3 | |
| IL_5T2C_283 | 1/AA/1214:1217, 1/AA/1681:1685 | C-loop | homologous IL_8CRE_445 IL_63596.12 | |
| IL_5T2C_249 | 1/AA/1218:1221, 1/AA/1645:1680 | No text annotation | ||
| IL_5T2C_284 | 1/AA/1235:1266, 1/AA/1516:1523 | No text annotation | ||
| IL_5T2C_251 | 1/AA/1266:1324, 1/AA/1504:1516 | No text annotation | ||
| IL_5T2C_184 | 1/AA/1270:1324, 1/AA/1504:1512 | No text annotation | ||
| IL_5T2C_285 | 1/AA/1325:1333, 1/AA/1498:1503 | No text annotation | ||
| IL_5T2C_185 | 1/AA/1325:1335, 1/AA/1492:1503 | No text annotation | ||
| IL_5T2C_286 | 1/AA/1333:1335, 1/AA/1492:1498 | No text annotation | homologous IL_8P9A_440 IL_34117.1 | |
| IL_5T2C_186 | 1/AA/1337:1340, 1/AA/1486:1490 | Tandem non-canonical cWW pairs | geometric IL_1MFQ_004 IL_15225.2 | |
| IL_5T2C_187 | 1/AA/1346:1349, 1/AA/1380:1383 | Tandem non-canonical cWW pairs | geometric IL_361D_001 NA | |
| IL_5T2C_188 | 1/AA/1363:1366, 1/AA/1373:1375 | Minor groove platform with extra cWW | geometric IL_7RQB_031 NA | |
| IL_5T2C_189 | 1/AA/1411:1419, 1/AA/1428:1434 | No text annotation | ||
| IL_5T2C_252 | 1/AA/1540:1550, 1/AA/1582:1593 | No text annotation | ||
| IL_5T2C_190 | 1/AA/1550:1558, 1/AA/1577:1582 | 180 degree turn | geometric IL_5J7L_055 NA | |
| IL_5T2C_191 | 1/AA/1559:1562, 1/AA/1573:1576 | Tandem non-canonical cWW pairs | homologous IL_4V88_461 NA | |
| IL_5T2C_192 | 1/AA/1604:1610, 1/AA/1629:1635 | No text annotation | homologous IL_8C3A_469 NA | |
| IL_5T2C_253 | 1/AA/1706:1708, 1/AA/1826:1828 | Isolated non-canonical cWW pair | homologous IL_8P9A_454 IL_01003.3 | |
| IL_5T2C_194 | 1/AA/1708:1716, 1/AA/1817:1826 | No text annotation | ||
| IL_5T2C_254 | 1/AA/1708:1720, 1/AA/1813:1826 | No text annotation | ||
| IL_5T2C_195 | 1/AA/1716:1720, 1/AA/1813:1817 | Double sheared with non-canonical cWW | geometric IL_1U6B_002 IL_87767.2 | |
| IL_5T2C_196 | 1/AA/1720:1722, 1/AA/1812:1813 | Single bulged U | homologous IL_4V88_469 NA | |
| IL_5T2C_287 | 1/AA/1729:1731, 1/AA/1803:1805 | Isolated non-canonical cWW pair | homologous IL_8CRE_473 IL_71625.3 | |
| IL_5T2C_288 | 1/AA/1733:1741, 1/AA/1793:1801 | No text annotation | ||
| IL_5T2C_197 | 1/AA/1742:1746, 1/AA/1788:1792 | Triple sheared | homologous IL_4V88_474 NA | |
| IL_5T2C_289 | 1/An/8:49, 1/An/65:66 | No text annotation | ||
| IL_5T2C_198 | 1/B/15:16, 1/B/62:64 | Single bulged A | homologous IL_5TBW_372 NA | |
| IL_5T2C_199 | 1/B/21:27, 1/B/52:57 | Minor groove platform related | homologous IL_5TBW_373 NA | |
| IL_5T2C_290 | 1/B/28:29, 1/B/48:51 | Major groove minor groove platform; mini C-loop | homologous IL_4WF9_126 IL_73108.2 | |
| IL_5T2C_201 | 1/B/32:36, 1/B/41:45 | Symmetric double minor groove platform | geometric IL_7RQB_114 NA | |
| IL_5T2C_202 | 1/B/71:78, 1/B/98:104 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5TBW_116 NA | |
| IL_5T2C_203 | 1/B/79:81, 1/B/95:97 | Isolated non-canonical cWW pair | geometric IL_7A0S_107 IL_71625.3 | |
| IL_5T2C_204 | 1/B/82:85, 1/B/92:94 | Isolated non-canonical cWW pair | homologous IL_5TBW_378 NA | |
| IL_5T2C_291 | 1/C/64:66, 1/C/92:95 | Isolated non-canonical cWW with bulges | homologous IL_8P9A_371 IL_76400.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5T2C_208 | Single stack bend | ||
| IL_5T2C_010 | No text annotation | ||
| IL_5T2C_209 | No text annotation | ||
| IL_5T2C_019 | Isolated cWS basepair | ||
| IL_5T2C_210 | Tandem non-canonical cWW pairs | ||
| IL_5T2C_021 | No text annotation | ||
| IL_5T2C_023 | No text annotation | ||
| IL_5T2C_213 | No text annotation | ||
| IL_5T2C_263 | No text annotation | ||
| IL_5T2C_214 | No text annotation | ||
| IL_5T2C_024 | Single stack bend | ||
| IL_5T2C_215 | No text annotation | ||
| IL_5T2C_025 | Single stack bend | ||
| IL_5T2C_026 | No text annotation | ||
| IL_5T2C_027 | Isolated non-canonical cWW pair | ||
| IL_5T2C_036 | Isolated cWS basepair | ||
| IL_5T2C_037 | No text annotation | ||
| IL_5T2C_039 | No text annotation | ||
| IL_5T2C_265 | Single stack bend | ||
| IL_5T2C_055 | No text annotation | ||
| IL_5T2C_218 | No text annotation | ||
| IL_5T2C_219 | No text annotation | ||
| IL_5T2C_066 | No text annotation | ||
| IL_5T2C_068 | No text annotation | ||
| IL_5T2C_266 | Kink-turn | ||
| IL_5T2C_222 | No text annotation | ||
| IL_5T2C_092 | No text annotation | ||
| IL_5T2C_095 | No text annotation | ||
| IL_5T2C_227 | No text annotation | ||
| IL_5T2C_104 | No text annotation | ||
| IL_5T2C_228 | No text annotation | ||
| IL_5T2C_108 | Isolated non-canonical cWW pair | ||
| IL_5T2C_130 | Isolated non-canonical cWW pair | ||
| IL_5T2C_132 | No text annotation | ||
| IL_5T2C_133 | No text annotation | ||
| IL_5T2C_232 | No text annotation | ||
| IL_5T2C_233 | Tandem non-canonical cWW pairs | ||
| IL_5T2C_137 | Single bulged C | ||
| IL_5T2C_234 | No text annotation | ||
| IL_5T2C_144 | No text annotation | ||
| IL_5T2C_145 | No text annotation | ||
| IL_5T2C_150 | No text annotation | ||
| IL_5T2C_236 | No text annotation | ||
| IL_5T2C_153 | No text annotation | ||
| IL_5T2C_273 | No text annotation | ||
| IL_5T2C_154 | No text annotation | ||
| IL_5T2C_155 | No text annotation | ||
| IL_5T2C_157 | No text annotation | ||
| IL_5T2C_160 | Isolated non-canonical cWW pair | ||
| IL_5T2C_163 | No text annotation | ||
| IL_5T2C_239 | No text annotation | ||
| IL_5T2C_166 | Tandem non-canonical cWW pairs | ||
| IL_5T2C_167 | No text annotation | ||
| IL_5T2C_243 | No text annotation | ||
| IL_5T2C_170 | No text annotation | ||
| IL_5T2C_173 | Triple non-canonical cWW pairs | ||
| IL_5T2C_174 | Kink-turn related | ||
| IL_5T2C_244 | Kink-turn | ||
| IL_5T2C_176 | tSH-tHW-tHS-cWW | ||
| IL_5T2C_246 | No text annotation | ||
| IL_5T2C_247 | No text annotation | ||
| IL_5T2C_179 | No text annotation | ||
| IL_5T2C_248 | Tandem non-canonical cWW pairs | ||
| IL_5T2C_183 | No text annotation | ||
| IL_5T2C_250 | No text annotation | ||
| IL_5T2C_193 | Tandem non-canonical cWW pairs | ||
| IL_5T2C_255 | Tandem non-canonical cWW pairs | ||
| IL_5T2C_256 | No text annotation | ||
| IL_5T2C_257 | No text annotation | ||
| IL_5T2C_258 | No text annotation | ||
| IL_5T2C_259 | No text annotation | ||
| IL_5T2C_200 | No text annotation | ||
| IL_5T2C_205 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_5T2C_001 | 1/A/112:116, 1/A/155:160, 1/A/275:278 | No text annotation | ||
| J3_5T2C_021 | 1/A/351:367, 1/A/374:379, 1/C/21:24 | No text annotation | homologous J3_8P9A_045 J3_07616.1 | |
| J3_5T2C_002 | 1/A/380:387, 1/A/414:415, 1/C/19:20 | No text annotation | homologous J3_5TBW_002 NA | |
| J3_5T2C_022 | 1/A/380:390, 1/A/401:415, 1/C/19:20 | No text annotation | homologous J3_8P9A_047 J3_17917.1 | |
| J3_5T2C_034 | 1/A/448:456, 1/A/700:704, 1/A/1293:1298 | No text annotation | ||
| J3_5T2C_035 | 1/A/1531:1537, 1/A/1622:1624, 1/A/1640:1643 | No text annotation | homologous J3_8CRE_009 NA | |
| J3_5T2C_025 | 1/A/1545:1548, 1/A/1580:1584, 1/A/1609:1614 | No text annotation | homologous J3_8P9A_050 J3_21998.1 | |
| J3_5T2C_005 | 1/A/2393:2399, 1/A/2805:2807, 1/A/2819:2822 | No text annotation | homologous J3_8C3A_006 NA | |
| J3_5T2C_006 | 1/A/2402:2405, 1/A/2785:2791, 1/A/2800:2802 | No text annotation | homologous J3_8C3A_007 NA | |
| J3_5T2C_007 | 1/A/2440:2445, 1/A/2515:2519, 1/A/2536:2537 | No text annotation | homologous J3_8P9A_055 J3_94309.1 | |
| J3_5T2C_026 | 1/A/2451:2456, 1/A/2465:2476, 1/A/2501:2508 | No text annotation | ||
| J3_5T2C_008 | 1/A/2575:2576, 1/A/2585:2589, 1/A/2756:2757 | No text annotation | homologous J3_8C3A_054 NA | |
| J3_5T2C_027 | 1/A/2598:2602, 1/A/2737:2738, 1/A/2742:2747 | No text annotation | homologous J3_8P9A_058 J3_08594.1 | |
| J3_5T2C_009 | 1/A/3937:3939, 1/A/4074:4078, 1/A/4168:4173 | Kink-turn 3-way junction | geometric J3_5J7L_044 NA | |
| J3_5T2C_028 | 1/A/4228:4230, 1/A/4331:4342, 1/A/4370:4375 | No text annotation | homologous J3_8C3A_056 NA | |
| J3_5T2C_010 | 1/A/4241:4243, 1/A/4267:4269, 1/A/4278:4283 | No text annotation | homologous J3_8C3A_010 NA | |
| J3_5T2C_011 | 1/A/4463:4466, 1/A/4491:4493, 1/A/4507:4513 | No text annotation | homologous J3_8C3A_011 NA | |
| J3_5T2C_036 | 1/A/4970:4975, 1/A/4983:4991, 1/A/5060:5063 | No text annotation | ||
| J3_5T2C_029 | 1/AA/36:49, 1/AA/477:487, 1/AA/512:519 | No text annotation | ||
| J3_5T2C_037 | 1/AA/938:941, 1/AA/985:994, 1/AA/999:1004 | No text annotation | ||
| J3_5T2C_030 | 1/AA/1094:1096, 1/AA/1136:1140, 1/AA/1147:1151 | No text annotation | ||
| J3_5T2C_015 | 1/AA/1234:1245, 1/AA/1254:1266, 1/AA/1516:1524 | No text annotation | ||
| J3_5T2C_038 | 1/AA/1337:1345, 1/AA/1384:1389, 1/AA/1481:1490 | No text annotation | ||
| J3_5T2C_016 | 1/AA/1340:1345, 1/AA/1384:1391, 1/AA/1479:1486 | No text annotation | ||
| J3_5T2C_017 | 1/AA/1350:1351, 1/AA/1360:1363, 1/AA/1375:1379 | No text annotation | homologous J3_8P9A_081 J3_76043.4 | |
| J3_5T2C_039 | 1/AA/1391:1411, 1/AA/1434:1457, 1/AA/1469:1479 | No text annotation | ||
| J3_5T2C_018 | 1/An/8:12, 1/An/24:50, 1/An/64:66 | No text annotation | ||
| J3_5T2C_033 | 1/B/9:14, 1/B/65:66, 1/B/109:110 | No text annotation | homologous J3_8P9A_066 J3_26985.1 | |
| J3_5T2C_040 | 1/C/44:45, 1/C/58:64, 1/C/95:99 | No text annotation | homologous J3_8CRE_027 NA | |
| J4_5T2C_001 | 1/A/196:199, 1/A/215:222, 1/A/226:228, 1/A/240:244 | No text annotation | ||
| J4_5T2C_002 | 1/A/2365:2371, 1/A/2389:2391, 1/A/2824:2829, 1/A/3856:3857 | No text annotation | ||
| J4_5T2C_003 | 1/A/2406:2410, 1/A/2434:2439, 1/A/2538:2539, 1/A/2777:2784 | No text annotation | homologous J4_8P9A_015 J4_47264.1 | |
| J4_5T2C_004 | 1/A/2549:2555, 1/A/2572:2576, 1/A/2585:2589, 1/A/2756:2770 | No text annotation | ||
| J4_5T2C_005 | 1/A/2618:2619, 1/A/2637:2642, 1/A/2692:2698, 1/A/2718:2719 | No text annotation | ||
| J4_5T2C_006 | 1/A/3634:3638, 1/A/3650:3654, 1/A/3690:3694, 1/A/3821:3826 | No text annotation | homologous J4_8P9A_017 J4_78485.1 | |
| J4_5T2C_007 | 1/A/3696:3698, 1/A/3752:3754, 1/A/3770:3780, 1/A/3814:3819 | No text annotation | ||
| J4_5T2C_008 | 1/A/4231:4235, 1/A/4289:4291, 1/A/4318:4319, 1/A/4328:4330 | No text annotation | ||
| J4_5T2C_009 | 1/A/4587:4590, 1/A/4620:4621, 1/A/4676:4678, 1/A/4712:4715 | No text annotation | ||
| J4_5T2C_013 | 1/AA/14:21, 1/AA/653:663, 1/AA/1164:1166, 1/AA/1193:1197 | No text annotation | ||
| J4_5T2C_014 | 1/AA/671:673, 1/AA/1032:1037, 1/AA/1078:1089, 1/AA/1160:1161 | No text annotation | homologous J4_8P9A_022 J4_14595.1 | |
| J4_5T2C_015 | 1/AA/1225:1232, 1/AA/1526:1539, 1/AA/1594:1604, 1/AA/1635:1641 | No text annotation | ||
| J5_5T2C_001 | 1/A/19:21, 1/C/35:42, 1/C/101:106, 1/C/113:114, 1/C/136:138 | No text annotation | homologous J5_8P9A_010 J5_27223.1 | |
| J5_5T2C_002 | 1/A/111:116, 1/A/155:160, 1/A/275:283, 1/A/304:310, 1/A/327:330 | No text annotation | ||
| J5_5T2C_003 | 1/A/711:713, 1/A/955:983, 1/A/1070:1074, 1/A/1236:1248, 1/A/1262:1285 | No text annotation | ||
| J5_5T2C_004 | 1/A/1335:1340, 1/A/1516:1519, 1/A/1658:1661, 1/A/2288:2290, 1/A/2345:2351 | No text annotation | homologous J5_8P9A_011 J5_08384.1 | |
| J5_5T2C_005 | 1/A/2855:2863, 1/A/2887:2888, 1/A/3613:3614, 1/A/3618:3626, 1/A/3835:3837 | No text annotation | homologous J5_8C3A_004 NA | |
| J5_5T2C_006 | 1/A/3902:3910, 1/A/4392:4400, 1/A/4444:4453, 1/A/4528:4534, 1/A/4552:4558 | No text annotation | ||
| J5_5T2C_010 | 1/A/3920:3923, 1/A/4188:4191, 1/A/4204:4205, 1/A/4227:4228, 1/A/4375:4381 | No text annotation | homologous J5_8P9A_015 J5_96125.1 | |
| J5_5T2C_008 | 1/AA/30:34, 1/AA/521:527, 1/AA/558:565, 1/AA/585:596, 1/AA/640:644 | No text annotation | ||
| J5_5T2C_009 | 1/AA/123:151, 1/AA/167:186, 1/AA/213:219, 1/AA/302:315, 1/AA/335:341 | No text annotation | ||
| J6_5T2C_001 | 1/A/21:26, 1/A/57:67, 1/A/74:78, 1/A/105:109, 1/A/332:339, 1/C/33:35 | No text annotation | ||
| J6_5T2C_002 | 1/A/1352:1355, 1/A/1384:1388, 1/A/1395:1399, 1/A/1418:1421, 1/A/1464:1466, 1/A/1499:1504 | No text annotation | ||
| J6_5T2C_004 | 1/A/3920:3923, 1/A/4188:4191, 1/A/4204:4205, 1/A/4227:4230, 1/A/4331:4342, 1/A/4370:4381 | No text annotation | ||
| J6_5T2C_003 | 1/A/3920:3924, 1/A/4187:4191, 1/A/4204:4205, 1/A/4227:4230, 1/A/4331:4342, 1/A/4370:4381 | No text annotation | ||
| J7_5T2C_001 | 1/A/1666:1671, 1/A/1684:1688, 1/A/1848:1855, 1/A/1879:1884, 1/A/1895:1899, 1/A/2077:2078, 1/A/2278:2283 | No text annotation | ||
| J7_5T2C_002 | 1/AA/49:62, 1/AA/86:106, 1/AA/355:358, 1/AA/404:409, 1/AA/431:436, 1/AA/457:461, 1/AA/469:477 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_5T2C_023 | No text annotation | ||
| J3_5T2C_003 | No text annotation | ||
| J3_5T2C_024 | No text annotation | ||
| J3_5T2C_004 | No text annotation | ||
| J3_5T2C_012 | No text annotation | ||
| J3_5T2C_013 | No text annotation | ||
| J3_5T2C_014 | No text annotation | ||
| J3_5T2C_031 | No text annotation | ||
| J3_5T2C_032 | No text annotation | ||
| J3_5T2C_019 | No text annotation | ||
| J3_5T2C_020 | No text annotation | ||
| J4_5T2C_010 | No text annotation | ||
| J4_5T2C_011 | No text annotation | ||
| J4_5T2C_012 | No text annotation | ||
| J5_5T2C_007 | No text annotation |
Coloring options: