HL_5T2C_016

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCCGAAGAGGG

Length

11 nucleotides

Bulged bases

5T2C|1|A|A|1255

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T2C_016 not in the Motif Atlas

Geometric match to HL_4LFB_004

Geometric discrepancy: 0.3689

The information below is about HL_4LFB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

5T2C|1|A|C|1250
5T2C|1|A|C|1251
5T2C|1|A|C|1252
5T2C|1|A|G|1253
5T2C|1|A|A|1254
5T2C|1|A|A|1255
5T2C|1|A|G|1256
5T2C|1|A|A|1257
5T2C|1|A|G|1258
5T2C|1|A|G|1259
5T2C|1|A|G|1260

Current chains

Chain A

28S rRNA

Nearby chains