HL_5T2C_018
3D structure
- PDB id
- 5T2C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the human ribosome at 3.6 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CUCGCACGAAAG
- Length
- 12 nucleotides
- Bulged bases
- 5T2C|1|A|C|1367, 5T2C|1|A|A|1371
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5T2C_018 not in the Motif Atlas
- Geometric match to HL_2ZZM_002
- Geometric discrepancy: 0.3502
- The information below is about HL_2ZZM_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_33487.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
5T2C|1|A|C|1363
5T2C|1|A|U|1364
5T2C|1|A|C|1365
5T2C|1|A|G|1366
5T2C|1|A|C|1367
5T2C|1|A|A|1368
5T2C|1|A|C|1369
5T2C|1|A|G|1370
5T2C|1|A|A|1371
5T2C|1|A|A|1372
5T2C|1|A|A|1373
5T2C|1|A|G|1374
Current chains
- Chain A
- 28S rRNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain F
- 60S ribosomal protein L4
- Chain S
- 60S ribosomal protein L26
- Chain r
- 60S ribosomal protein L13
- Chain t
- 60S ribosomal protein L15
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