Loop HL_5T2C

3D structure

PDB id: 5T2C (explore in PDB, NAKB, or RNA 3D Hub)
Description: CryoEM structure of the human ribosome at 3.6 Angstrom resolution
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å

Loop

Sequence: AGGACGGUGGCCAUGGAAGUCGGAAUCCGCUAAGGAGUGUGUAACAACUCACCU
Length: 54 nucleotides
Bulged bases: 5T2C|1|A|U|1980, 5T2C|1|A|G|1981, 5T2C|1|A|A|2009
QA status: Unknown status

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5T2C|1|A|A|1967
5T2C|1|A|G|1968
5T2C|1|A|G|1969
5T2C|1|A|A|1970
5T2C|1|A|C|1971
5T2C|1|A|G|1972
5T2C|1|A|G|1973
5T2C|1|A|U|1974
5T2C|1|A|G|1975
5T2C|1|A|G|1976
5T2C|1|A|C|1977
5T2C|1|A|C|1978
5T2C|1|A|A|1979
5T2C|1|A|U|1980
5T2C|1|A|G|1981
5T2C|1|A|G|1982
5T2C|1|A|A|1983
5T2C|1|A|A|1984
5T2C|1|A|G|1985
5T2C|1|A|U|1986
5T2C|1|A|C|1987
5T2C|1|A|G|1988
5T2C|1|A|G|1989
5T2C|1|A|A|1990
5T2C|1|A|A|1991
5T2C|1|A|U|1992
5T2C|1|A|C|1993
5T2C|1|A|C|1994
5T2C|1|A|G|1995
5T2C|1|A|C|1996
5T2C|1|A|U|1997
5T2C|1|A|A|1998
5T2C|1|A|A|1999
5T2C|1|A|G|2000
5T2C|1|A|G|2001
5T2C|1|A|A|2002
5T2C|1|A|G|2003
5T2C|1|A|U|2004
5T2C|1|A|G|2005
5T2C|1|A|U|2006
5T2C|1|A|G|2007
5T2C|1|A|U|2008
5T2C|1|A|A|2009
5T2C|1|A|A|2010
5T2C|1|A|C|2011
5T2C|1|A|A|2012
5T2C|1|A|A|2013
5T2C|1|A|C|2014
5T2C|1|A|U|2015
5T2C|1|A|C|2016
5T2C|1|A|A|2017
5T2C|1|A|C|2018
5T2C|1|A|C|2019
5T2C|1|A|U|2020

Current chains

Chain A: 28S rRNA

Nearby chains

Chain g: Ubiquitin-60S ribosomal protein L40
Chain p: 60S ribosomal protein L10-like

HL_5T2C_031