HL_5T2C_036

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAGCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T2C_036 not in the Motif Atlas

Homologous match to HL_8C3A_033

Geometric discrepancy: 0.1971

The information below is about HL_8C3A_033

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5T2C|1|A|C|2458
5T2C|1|A|G|2459
5T2C|1|A|A|2460
5T2C|1|A|G|2461
5T2C|1|A|C|2462
5T2C|1|A|G|2463

Current chains

Chain A

28S rRNA

Nearby chains

Chain d

60S ribosomal protein L37

Chain t

60S ribosomal protein L15