HL_5T2C_038
3D structure
- PDB id
- 5T2C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the human ribosome at 3.6 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GUUCAGAUCC
- Length
- 10 nucleotides
- Bulged bases
- 5T2C|1|A|U|2530, 5T2C|1|A|C|2531
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5T2C_038 not in the Motif Atlas
- Homologous match to HL_8C3A_035
- Geometric discrepancy: 0.1808
- The information below is about HL_8C3A_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_35087.1
- Basepair signature
- cWW-tWH-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
5T2C|1|A|G|2523
5T2C|1|A|U|2524
5T2C|1|A|U|2525
5T2C|1|A|C|2526
5T2C|1|A|A|2527
5T2C|1|A|G|2528
5T2C|1|A|A|2529
5T2C|1|A|U|2530
5T2C|1|A|C|2531
5T2C|1|A|C|2532
Current chains
- Chain A
- 28S rRNA
Nearby chains
- Chain L
- 60S ribosomal protein L19
- Chain R
- 60S ribosomal protein L23a
- Chain a
- 60S ribosomal protein L34
Coloring options: