HL_5T2C_043

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGGUUCCGG

Length

9 nucleotides

Bulged bases

5T2C|1|A|U|2707, 5T2C|1|A|U|2708

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T2C_043 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.1277

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

5T2C|1|A|C|2704
5T2C|1|A|G|2705
5T2C|1|A|G|2706
5T2C|1|A|U|2707
5T2C|1|A|U|2708
5T2C|1|A|C|2709
5T2C|1|A|C|2710
5T2C|1|A|G|2711
5T2C|1|A|G|2712

Current chains

Chain A

28S rRNA

Nearby chains

Chain L

60S ribosomal protein L19

Chain O

60S ribosomal protein L22

Chain R

60S ribosomal protein L23a