HL_5T2C_046

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGAACAG

Length

7 nucleotides

Bulged bases

5T2C|1|A|C|2814

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T2C_046 not in the Motif Atlas

Homologous match to HL_8C3A_042

Geometric discrepancy: 0.1676

The information below is about HL_8C3A_042

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5T2C|1|A|U|2810
5T2C|1|A|G|2811
5T2C|1|A|A|2812
5T2C|1|A|A|2813
5T2C|1|A|C|2814
5T2C|1|A|A|2815
5T2C|1|A|G|2816

Current chains

Chain A

28S rRNA

Nearby chains

Chain L

60S ribosomal protein L19