HL_5T2C_055

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

5T2C|1|A|A|3876, 5T2C|1|A|A|3877, 5T2C|1|A|C|3878

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T2C_055 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.1421

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

5T2C|1|A|G|3873
5T2C|1|A|G|3874
5T2C|1|A|G|3875
5T2C|1|A|A|3876
5T2C|1|A|A|3877
5T2C|1|A|C|3878
5T2C|1|A|G|3879
5T2C|1|A|G|3880
5T2C|1|A|G|3881
5T2C|1|A|C|3882

Current chains

Chain A

28S rRNA

Nearby chains

Chain E

60S ribosomal protein L3

Chain Y

60S ribosomal protein L32