HL_5T2C_056
3D structure
- PDB id
- 5T2C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the human ribosome at 3.6 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GAGAGGUGUAGAAUAAGUGGGAGGCCCGGGCCGCCGGUGAAAUACCACUACUCUGGGCCCGGGGCGGGGUCCGCCGGCCCUGCGGGCCGCCGGUGAAAUACCACUACUC*U
- Length
- 110 nucleotides
- Bulged bases
- 5T2C|1|A|A|3962, 5T2C|1|A|U|3964, 5T2C|1|A|A|3972, 5T2C|1|A|C|3977, 5T2C|1|A|G|4034, 5T2C|1|A|G|4035, 5T2C|1|A|U|4044, 5T2C|1|A|G|4005, 5T2C|1|A|G|4006, 5T2C|1|A|G|4007, 5T2C|1|A|C|4008, 5T2C|1|A|C|4009, 5T2C|1|A|C|4010, 5T2C|1|A|G|4011, 5T2C|1|A|G|4012, 5T2C|1|A|G|4013, 5T2C|1|A|G|4014, 5T2C|1|A|C|4015, 5T2C|1|A|G|4016, 5T2C|1|A|G|4017, 5T2C|1|A|G|4018, 5T2C|1|A|G|4019, 5T2C|1|A|U|4020, 5T2C|1|A|C|4021, 5T2C|1|A|C|4022, 5T2C|1|A|G|4023, 5T2C|1|A|C|4024, 5T2C|1|A|C|4025, 5T2C|1|A|G|4026, 5T2C|1|A|G|4027, 5T2C|1|A|C|4028, 5T2C|1|A|C|4029, 5T2C|1|A|C|4030, 5T2C|1|A|U|4031, 5T2C|1|A|G|4032, 5T2C|1|A|C|4033, 5T2C|1|A|G|4034, 5T2C|1|A|G|4035, 5T2C|1|A|U|4044, 5T2C|1|A|A|4047, 5T2C|1|A|U|4049, 5T2C|1|A|A|4053, 5T2C|1|A|C|4054
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5T2C|1|A|G|3951
5T2C|1|A|A|3952
5T2C|1|A|G|3953
5T2C|1|A|A|3954
5T2C|1|A|G|3955
5T2C|1|A|G|3956
5T2C|1|A|U|3957
5T2C|1|A|G|3958
5T2C|1|A|U|3959
5T2C|1|A|A|3960
5T2C|1|A|G|3961
5T2C|1|A|A|3962
5T2C|1|A|A|3963
5T2C|1|A|U|3964
5T2C|1|A|A|3965
5T2C|1|A|A|3966
5T2C|1|A|G|3967
5T2C|1|A|U|3968
5T2C|1|A|G|3969
5T2C|1|A|G|3970
5T2C|1|A|G|3971
5T2C|1|A|A|3972
5T2C|1|A|G|3973
5T2C|1|A|G|3974
5T2C|1|A|C|3975
5T2C|1|A|C|3976
5T2C|1|A|C|3977
5T2C|1|A|G|4034
5T2C|1|A|G|4035
5T2C|1|A|G|4036
5T2C|1|A|C|4037
5T2C|1|A|C|4038
5T2C|1|A|G|4039
5T2C|1|A|C|4040
5T2C|1|A|C|4041
5T2C|1|A|G|4042
5T2C|1|A|G|4043
5T2C|1|A|U|4044
5T2C|1|A|G|4045
5T2C|1|A|A|4046
5T2C|1|A|A|4047
5T2C|1|A|A|4048
5T2C|1|A|U|4049
5T2C|1|A|A|4050
5T2C|1|A|C|4051
5T2C|1|A|C|4052
5T2C|1|A|A|4053
5T2C|1|A|C|4054
5T2C|1|A|U|4055
5T2C|1|A|A|4056
5T2C|1|A|C|4057
5T2C|1|A|U|4058
5T2C|1|A|C|4059
5T2C|1|A|U|4060
5T2C|1|A|G|4005
5T2C|1|A|G|4006
5T2C|1|A|G|4007
5T2C|1|A|C|4008
5T2C|1|A|C|4009
5T2C|1|A|C|4010
5T2C|1|A|G|4011
5T2C|1|A|G|4012
5T2C|1|A|G|4013
5T2C|1|A|G|4014
5T2C|1|A|C|4015
5T2C|1|A|G|4016
5T2C|1|A|G|4017
5T2C|1|A|G|4018
5T2C|1|A|G|4019
5T2C|1|A|U|4020
5T2C|1|A|C|4021
5T2C|1|A|C|4022
5T2C|1|A|G|4023
5T2C|1|A|C|4024
5T2C|1|A|C|4025
5T2C|1|A|G|4026
5T2C|1|A|G|4027
5T2C|1|A|C|4028
5T2C|1|A|C|4029
5T2C|1|A|C|4030
5T2C|1|A|U|4031
5T2C|1|A|G|4032
5T2C|1|A|C|4033
5T2C|1|A|G|4034
5T2C|1|A|G|4035
5T2C|1|A|G|4036
5T2C|1|A|C|4037
5T2C|1|A|C|4038
5T2C|1|A|G|4039
5T2C|1|A|C|4040
5T2C|1|A|C|4041
5T2C|1|A|G|4042
5T2C|1|A|G|4043
5T2C|1|A|U|4044
5T2C|1|A|G|4045
5T2C|1|A|A|4046
5T2C|1|A|A|4047
5T2C|1|A|A|4048
5T2C|1|A|U|4049
5T2C|1|A|A|4050
5T2C|1|A|C|4051
5T2C|1|A|C|4052
5T2C|1|A|A|4053
5T2C|1|A|C|4054
5T2C|1|A|U|4055
5T2C|1|A|A|4056
5T2C|1|A|C|4057
5T2C|1|A|U|4058
5T2C|1|A|C|4059
*
5T2C|1|A|U|4060
Current chains
- Chain A
- 28S rRNA
Nearby chains
- Chain An
- Transfer RNA; tRNA
- Chain Ap
- 40S ribosomal protein S3a
- Chain l
- 60S ribosomal protein L10a
Coloring options: